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author | Chris White <chriswhite@gentoo.org> | 2005-11-30 09:49:41 +0000 |
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committer | Chris White <chriswhite@gentoo.org> | 2005-11-30 09:49:41 +0000 |
commit | 14afc7ac4f63d55e776e6880f47f1c635021b0cc (patch) | |
tree | c935d59c46497de060f501912e5e27df91538d54 /sci-biology/prints | |
parent | (no commit message) (diff) | |
download | gentoo-2-14afc7ac4f63d55e776e6880f47f1c635021b0cc.tar.gz gentoo-2-14afc7ac4f63d55e776e6880f47f1c635021b0cc.tar.bz2 gentoo-2-14afc7ac4f63d55e776e6880f47f1c635021b0cc.zip |
*** empty log message ***
Diffstat (limited to 'sci-biology/prints')
-rw-r--r-- | sci-biology/prints/ChangeLog | 35 | ||||
-rw-r--r-- | sci-biology/prints/Manifest | 6 | ||||
-rw-r--r-- | sci-biology/prints/prints-37.0.ebuild | 22 | ||||
-rw-r--r-- | sci-biology/prints/prints-38.0.ebuild | 2 |
4 files changed, 50 insertions, 15 deletions
diff --git a/sci-biology/prints/ChangeLog b/sci-biology/prints/ChangeLog index dcb9016650b6..23c1f33b3c00 100644 --- a/sci-biology/prints/ChangeLog +++ b/sci-biology/prints/ChangeLog @@ -1,6 +1,35 @@ -# ChangeLog for app-sci/prints -# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.1 2004/12/23 21:21:48 ribosome Exp $ +# ChangeLog for sci-biology/prints +# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $ + + 19 Nov 2005; Simon Stelling <blubb@gentoo.org> prints-37.0.ebuild: + stable on amd64 + +*prints-38.0 (18 Oct 2005) + + 18 Oct 2005; Olivier Fisette <ribosome@gentoo.org> +prints-38.0.ebuild: + New version. + + 04 Sep 2005; Simon Stelling <blubb@gentoo.org> prints-37.0.ebuild: + added ~amd64 keyword + + 19 Jun 2005; Markus Rothe <corsair@gentoo.org> prints-37.0.ebuild: + Stable on ppc64 + + 02 May 2005; Omkhar Arasaratnam <omkhar@gentoo.org> prints-37.0.ebuild: + Added ~ppc64 + + 02 May 2005; Michael Hanselmann <hansmi@gentoo.org> prints-37.0.ebuild: + Stable on ppc. + + 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> prints-37.0.ebuild: + Added support for the "emboss" and "minimal" "USE" flags. + + 02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> prints-37.0.ebuild: + Stable ppc-macos + + 01 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> prints-37.0.ebuild: + Unstable ppc-macos. *prints-37.0 (23 Dec 2004) diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest index b56d62f75dfb..1b385ee71628 100644 --- a/sci-biology/prints/Manifest +++ b/sci-biology/prints/Manifest @@ -1,4 +1,6 @@ -MD5 1c8d284adadedde34a18685c9c62e6a7 prints-37.0.ebuild 1406 -MD5 9ac779989e13cec1b5bd6b77ff3ead74 ChangeLog 614 +MD5 5780945b6a83c7e71e6740b13852f830 ChangeLog 1675 MD5 1ac1b9a7f4647c51e178fee97f2e8fa8 metadata.xml 876 +MD5 ba822d0c192d1bd21cbcda963f23d810 prints-37.0.ebuild 1397 +MD5 01cc2ff7dd4c370cd4e150b1ffacc729 prints-38.0.ebuild 1256 MD5 480ec57dbfe7db281e30726e6e1160bd files/digest-prints-37.0 365 +MD5 aec0974e2bbc992669aec8865dae02fc files/digest-prints-38.0 66 diff --git a/sci-biology/prints/prints-37.0.ebuild b/sci-biology/prints/prints-37.0.ebuild index 1a8d0bb8832c..9728de2d1013 100644 --- a/sci-biology/prints/prints-37.0.ebuild +++ b/sci-biology/prints/prints-37.0.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2004 Gentoo Foundation +# Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.1 2004/12/23 21:21:48 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $ DESCRIPTION="A protein motif fingerprint database" HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/" @@ -12,28 +12,32 @@ SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.vsn.gz" LICENSE="public-domain" SLOT="0" -KEYWORDS="x86 ~ppc" -IUSE="no-emboss no-rawdb" +KEYWORDS="amd64 ppc ppc-macos ppc64 x86" +IUSE="emboss minimal" +# Minimal build keeps only the indexed files (if applicable) and the documentation. +# The non-indexed database is not installed. + +DEPEND="emboss? ( sci-biology/emboss )" S=${WORKDIR} src_compile() { - # Index the database for use with emboss if emboss is installed and - # the user did not explicitly request not to index the database. - if [ -e /usr/bin/printsextract ] && ! use no-emboss; then + if use emboss; then mkdir PRINTS + echo einfo "Indexing PRINTS for usage with EMBOSS." EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \ "Indexing PRINTS failed." + echo fi } src_install() { - if ! use no-rawdb; then + if ! use minimal; then insinto /usr/share/${PN} doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis fi - if [ -e /usr/bin/printsextract ] && ! use no-emboss; then + if use emboss; then insinto /usr/share/EMBOSS/data/PRINTS doins PRINTS/* fi diff --git a/sci-biology/prints/prints-38.0.ebuild b/sci-biology/prints/prints-38.0.ebuild index d0980a930eef..6805f1fe9027 100644 --- a/sci-biology/prints/prints-38.0.ebuild +++ b/sci-biology/prints/prints-38.0.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2005 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-38.0.ebuild,v 1.1 2005/10/18 13:44:26 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-38.0.ebuild,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $ MY_PV="${PV/./_}" |