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authorChris White <chriswhite@gentoo.org>2005-11-30 09:49:41 +0000
committerChris White <chriswhite@gentoo.org>2005-11-30 09:49:41 +0000
commit14afc7ac4f63d55e776e6880f47f1c635021b0cc (patch)
treec935d59c46497de060f501912e5e27df91538d54 /sci-biology/prints
parent(no commit message) (diff)
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*** empty log message ***
Diffstat (limited to 'sci-biology/prints')
-rw-r--r--sci-biology/prints/ChangeLog35
-rw-r--r--sci-biology/prints/Manifest6
-rw-r--r--sci-biology/prints/prints-37.0.ebuild22
-rw-r--r--sci-biology/prints/prints-38.0.ebuild2
4 files changed, 50 insertions, 15 deletions
diff --git a/sci-biology/prints/ChangeLog b/sci-biology/prints/ChangeLog
index dcb9016650b6..23c1f33b3c00 100644
--- a/sci-biology/prints/ChangeLog
+++ b/sci-biology/prints/ChangeLog
@@ -1,6 +1,35 @@
-# ChangeLog for app-sci/prints
-# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.1 2004/12/23 21:21:48 ribosome Exp $
+# ChangeLog for sci-biology/prints
+# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/ChangeLog,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $
+
+ 19 Nov 2005; Simon Stelling <blubb@gentoo.org> prints-37.0.ebuild:
+ stable on amd64
+
+*prints-38.0 (18 Oct 2005)
+
+ 18 Oct 2005; Olivier Fisette <ribosome@gentoo.org> +prints-38.0.ebuild:
+ New version.
+
+ 04 Sep 2005; Simon Stelling <blubb@gentoo.org> prints-37.0.ebuild:
+ added ~amd64 keyword
+
+ 19 Jun 2005; Markus Rothe <corsair@gentoo.org> prints-37.0.ebuild:
+ Stable on ppc64
+
+ 02 May 2005; Omkhar Arasaratnam <omkhar@gentoo.org> prints-37.0.ebuild:
+ Added ~ppc64
+
+ 02 May 2005; Michael Hanselmann <hansmi@gentoo.org> prints-37.0.ebuild:
+ Stable on ppc.
+
+ 22 Feb 2005; Olivier Fisette <ribosome@gentoo.org> prints-37.0.ebuild:
+ Added support for the "emboss" and "minimal" "USE" flags.
+
+ 02 Feb 2005; Lina Pezzella <j4rg0n@gentoo.org> prints-37.0.ebuild:
+ Stable ppc-macos
+
+ 01 Jan 2005; Lina Pezzella <j4rg0n@gentoo.org> prints-37.0.ebuild:
+ Unstable ppc-macos.
*prints-37.0 (23 Dec 2004)
diff --git a/sci-biology/prints/Manifest b/sci-biology/prints/Manifest
index b56d62f75dfb..1b385ee71628 100644
--- a/sci-biology/prints/Manifest
+++ b/sci-biology/prints/Manifest
@@ -1,4 +1,6 @@
-MD5 1c8d284adadedde34a18685c9c62e6a7 prints-37.0.ebuild 1406
-MD5 9ac779989e13cec1b5bd6b77ff3ead74 ChangeLog 614
+MD5 5780945b6a83c7e71e6740b13852f830 ChangeLog 1675
MD5 1ac1b9a7f4647c51e178fee97f2e8fa8 metadata.xml 876
+MD5 ba822d0c192d1bd21cbcda963f23d810 prints-37.0.ebuild 1397
+MD5 01cc2ff7dd4c370cd4e150b1ffacc729 prints-38.0.ebuild 1256
MD5 480ec57dbfe7db281e30726e6e1160bd files/digest-prints-37.0 365
+MD5 aec0974e2bbc992669aec8865dae02fc files/digest-prints-38.0 66
diff --git a/sci-biology/prints/prints-37.0.ebuild b/sci-biology/prints/prints-37.0.ebuild
index 1a8d0bb8832c..9728de2d1013 100644
--- a/sci-biology/prints/prints-37.0.ebuild
+++ b/sci-biology/prints/prints-37.0.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2004 Gentoo Foundation
+# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.1 2004/12/23 21:21:48 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-37.0.ebuild,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $
DESCRIPTION="A protein motif fingerprint database"
HOMEPAGE="http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/"
@@ -12,28 +12,32 @@ SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/newpr.lis.gz
ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}37_0.vsn.gz"
LICENSE="public-domain"
SLOT="0"
-KEYWORDS="x86 ~ppc"
-IUSE="no-emboss no-rawdb"
+KEYWORDS="amd64 ppc ppc-macos ppc64 x86"
+IUSE="emboss minimal"
+# Minimal build keeps only the indexed files (if applicable) and the documentation.
+# The non-indexed database is not installed.
+
+DEPEND="emboss? ( sci-biology/emboss )"
S=${WORKDIR}
src_compile() {
- # Index the database for use with emboss if emboss is installed and
- # the user did not explicitly request not to index the database.
- if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+ if use emboss; then
mkdir PRINTS
+ echo
einfo "Indexing PRINTS for usage with EMBOSS."
EMBOSS_DATA=. printsextract -auto -infile prints37_0.dat || die \
"Indexing PRINTS failed."
+ echo
fi
}
src_install() {
- if ! use no-rawdb; then
+ if ! use minimal; then
insinto /usr/share/${PN}
doins ${PN}37_0.{all.fasta,dat,lis,nam,vsn} newpr.lis
fi
- if [ -e /usr/bin/printsextract ] && ! use no-emboss; then
+ if use emboss; then
insinto /usr/share/EMBOSS/data/PRINTS
doins PRINTS/*
fi
diff --git a/sci-biology/prints/prints-38.0.ebuild b/sci-biology/prints/prints-38.0.ebuild
index d0980a930eef..6805f1fe9027 100644
--- a/sci-biology/prints/prints-38.0.ebuild
+++ b/sci-biology/prints/prints-38.0.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2005 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-38.0.ebuild,v 1.1 2005/10/18 13:44:26 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/prints/prints-38.0.ebuild,v 1.1.1.1 2005/11/30 09:48:47 chriswhite Exp $
MY_PV="${PV/./_}"