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* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-051-4/+24
| | | | (Portage version: 2.1.11.50/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Specify LICENSE more precisely, see LICENSE file, bug 455566.Ulrich Müller2013-02-054-7/+11
| | | | (Portage version: 2.1.11.50/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-031-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Add ~ppc, wrt bug #452010Agostino Sarubbo2013-02-032-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-011-16/+13
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/readseq: Drop old; Resolve file collision sci-biology/meme, #455010Justin Lecher2013-02-015-68/+16
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Resolve file collision with app-text and ↵Justin Lecher2013-02-011-5/+6
| | | | | | sci-biology/readseq, #455010 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Resolve file collision with app-text and ↵Justin Lecher2013-02-013-5/+96
| | | | | | sci-biology/readseq, #455010 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-311-8/+12
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/augustus: Drop old, fixes multiple QA issues, #454822Justin Lecher2013-01-315-119/+10
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-311-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #454842Agostino Sarubbo2013-01-312-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-311-21/+11
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454842Agostino Sarubbo2013-01-312-6/+8
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ↵Justin Lecher2013-01-311-8/+7
| | | | | | #422899 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vienna-rna: Only call distutils phase functions with USE=python, ↵Justin Lecher2013-01-313-6/+18
| | | | | | #422899 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-311-4/+12
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old, fixes bug 297070 & bug 454662Justin Lecher2013-01-313-68/+7
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-301-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #454698Agostino Sarubbo2013-01-302-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-301-12/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for amd64, wrt bug #454698Agostino Sarubbo2013-01-302-4/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-301-10/+6
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Drop old; add examples handlingJustin Lecher2013-01-305-139/+14
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Version Bump; #452234; unbundles dev-libs/jsoncppJustin Lecher2013-01-281-8/+11
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Version Bump; #452234; unbundles dev-libs/jsoncppJustin Lecher2013-01-284-12/+91
| | | | (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/samtools: Add missing deps and correct sed lines, #454134; ↵Justin Lecher2013-01-271-5/+5
| | | | | | thanks Torsten Veller (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/samtools: Add missing deps and correct sed lines, #454134; ↵Justin Lecher2013-01-272-5/+15
| | | | | | thanks Torsten Veller (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/exonerate: We need USE=utils for testing, #453978; move to ↵Justin Lecher2013-01-251-11/+11
| | | | | | autotool-utils.eclass (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/exonerate: We need USE=utils for testing, #453978; move to ↵Justin Lecher2013-01-253-24/+35
| | | | | | autotool-utils.eclass (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/maqview: Fix compilation with gcc-4.7, #451438Justin Lecher2013-01-231-12/+14
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/maqview: Fix compilation with gcc-4.7, #451438Justin Lecher2013-01-234-7/+61
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/samtools: Drop old; use pkg-config to check for libncursesJustin Lecher2013-01-231-16/+12
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/samtools: Drop old; use pkg-config to check for libncursesJustin Lecher2013-01-235-106/+23
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Adding blocker for #453044Patrick Lauer2013-01-231-15/+4
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, unsigned Manifest commit)
* Adding blocker for #453044Patrick Lauer2013-01-234-9/+24
| | | | (Portage version: 2.2.0_alpha159/cvs/Linux x86_64, unsigned Manifest commit)
* Version bumpAndrey Kislyuk2013-01-211-19/+11
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64, unsigned Manifest commit)
* Version bumpAndrey Kislyuk2013-01-212-2/+42
| | | | (Portage version: 2.2.0_alpha134/cvs/Linux x86_64)
* sci-biology/t-coffee: Don't build TMalign, but depend on ↵Justin Lecher2013-01-141-6/+6
| | | | | | sci-chemistry/tm-align; fixes #451802 and #451804 (Portage version: 2.2.0_alpha151/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/t-coffee: Don't build TMalign, but depend on ↵Justin Lecher2013-01-143-14/+23
| | | | | | sci-chemistry/tm-align; fixes #451802 and #451804 (Portage version: 2.2.0_alpha151/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Forward command line arguments to ApE startup script, thanks to Markus Meier ↵Jeffrey Gardner2012-12-311-4/+5
| | | | | | in bug #375919 (Portage version: 2.1.11.38/cvs/Linux x86_64, unsigned Manifest commit)
* Forward command line arguments to ApE startup script, thanks to Markus Meier ↵Jeffrey Gardner2012-12-312-1/+63
| | | | | | in bug #375919 (Portage version: 2.1.11.38/cvs/Linux x86_64, unsigned Manifest commit)
* sci-biology/primer3: Drop oldJustin Lecher2012-12-171-5/+11
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/primer3: Drop oldJustin Lecher2012-12-173-96/+5
| | | | (Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-161-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Stable for ppc, wrt bug #446992Agostino Sarubbo2012-12-162-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux ppc64, unsigned Manifest commit)
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-161-2/+2
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Stable for x86, wrt bug #446992Agostino Sarubbo2012-12-162-3/+6
| | | | (Portage version: 2.1.11.31/cvs/Linux x86_64, unsigned Manifest commit)
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-141-14/+24
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)
* Update LICENSE, HPND according to LICENSE file.Ulrich Müller2012-12-144-9/+13
| | | | (Portage version: 2.1.11.37/cvs/Linux x86_64, signed Manifest commit with key E7BE08CA7DC6EA25)