From 002a6f5d13ca98552d08099e7ff9c10305ae93a6 Mon Sep 17 00:00:00 2001 From: Andrey Kislyuk Date: Wed, 28 Dec 2011 03:48:22 +0000 Subject: Version bump, remove old (Portage version: 2.2.0_alpha74/cvs/Linux x86_64) --- sci-biology/allpathslg/ChangeLog | 8 +++++- sci-biology/allpathslg/allpathslg-35725-r1.ebuild | 33 ---------------------- sci-biology/allpathslg/allpathslg-40063.ebuild | 34 +++++++++++++++++++++++ 3 files changed, 41 insertions(+), 34 deletions(-) delete mode 100644 sci-biology/allpathslg/allpathslg-35725-r1.ebuild create mode 100644 sci-biology/allpathslg/allpathslg-40063.ebuild (limited to 'sci-biology/allpathslg') diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog index ee976e444991..58b51e9efb48 100644 --- a/sci-biology/allpathslg/ChangeLog +++ b/sci-biology/allpathslg/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/allpathslg # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.5 2011/10/15 20:04:57 hwoarang Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.6 2011/12/28 03:48:22 weaver Exp $ + +*allpathslg-40063 (28 Dec 2011) + + 28 Dec 2011; Andrey Kislyuk + -allpathslg-35725-r1.ebuild, +allpathslg-40063.ebuild: + Version bump, remove old 15 Oct 2011; Markos Chandras allpathslg-37578.ebuild: Stable on amd64 wrt bug #384379 diff --git a/sci-biology/allpathslg/allpathslg-35725-r1.ebuild b/sci-biology/allpathslg/allpathslg-35725-r1.ebuild deleted file mode 100644 index e0d302533393..000000000000 --- a/sci-biology/allpathslg/allpathslg-35725-r1.ebuild +++ /dev/null @@ -1,33 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-35725-r1.ebuild,v 1.1 2011/01/27 16:23:34 weaver Exp $ - -EAPI="2" - -inherit autotools - -DESCRIPTION="De novo assembly of whole-genome shotgun microreads" -HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" -SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" - -LICENSE="as-is" -SLOT="0" -IUSE="" -KEYWORDS="~amd64" - -DEPEND="dev-libs/boost - >=sys-devel/gcc-4.3.3 - sci-biology/vaal" -RDEPEND="" - -src_prepare() { - eautoreconf -} - -src_install() { - einstall || die - # Provided by sci-biology/vaal - for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do - rm "${D}/usr/bin/$i" || die - done -} diff --git a/sci-biology/allpathslg/allpathslg-40063.ebuild b/sci-biology/allpathslg/allpathslg-40063.ebuild new file mode 100644 index 000000000000..b00a62e2451a --- /dev/null +++ b/sci-biology/allpathslg/allpathslg-40063.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-40063.ebuild,v 1.1 2011/12/28 03:48:22 weaver Exp $ + +EAPI=4 + +inherit autotools flag-o-matic + +DESCRIPTION="De novo assembly of whole-genome shotgun microreads" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64" + +DEPEND="dev-libs/boost + >=sys-devel/gcc-4.3.3 + sci-biology/vaal" +RDEPEND="" + +src_prepare() { + sed -i 's/-ggdb3//' configure.ac || die + eautoreconf +} + +src_install() { + einstall || die + # Provided by sci-biology/vaal + for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do + rm "${D}/usr/bin/$i" || die + done +} -- cgit v1.2.3-65-gdbad