diff options
Diffstat (limited to 'sci-biology/amap')
| -rw-r--r-- | sci-biology/amap/amap-2.2-r2.ebuild | 50 |
1 files changed, 0 insertions, 50 deletions
diff --git a/sci-biology/amap/amap-2.2-r2.ebuild b/sci-biology/amap/amap-2.2-r2.ebuild deleted file mode 100644 index 389102a8e757..000000000000 --- a/sci-biology/amap/amap-2.2-r2.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI="2" - -inherit eutils toolchain-funcs java-pkg-opt-2 java-ant-2 - -MY_P=${PN}.${PV} - -DESCRIPTION="Protein multiple-alignment-based sequence annealing" -HOMEPAGE="http://bio.math.berkeley.edu/amap/" -SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="java" - -RDEPEND="java? ( >=virtual/jre-1.5 )" -DEPEND="java? ( >=virtual/jdk-1.5 )" - -S=${WORKDIR}/${PN}-align - -src_prepare() { - epatch "${FILESDIR}"/${P}-makefile.patch \ - "${FILESDIR}"/${P}-includes.patch -} - -src_compile() { - emake -C align CXX="$(tc-getCXX)" \ - OPT_CXXFLAGS="${CXXFLAGS}" || die "make failed" - - if use java; then - pushd "${S}"/display - eant -Ddisplay all || die - popd - fi -} - -src_install() { - dobin align/${PN} || die - dodoc align/{README,PROBCONS.README} || die - insinto /usr/share/${PN}/examples - doins examples/* || die - if use java; then - java-pkg_newjar "${S}"/display/AmapDisplay.jar amapdisplay.jar - java-pkg_dolauncher amapdisplay --jar amapdisplay.jar - fi -} |