Switch dep back to media-libs/glut from virtual/glut, pymol works really poorly with freeglut. You get messages about being unable to acquire a direct rendering context (i.e., no accelerated 3D).

(Portage version: 2.1.2_pre1)
 (Unsigned Manifest commit)

1 files changed, 63 insertions, 11 deletions

diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest
index f8699b384aaf..a6c2e64d3cc9 100644
--- a/sci-chemistry/pymol/Manifest
+++ b/sci-chemistry/pymol/Manifest
@@ -1,18 +1,70 @@
-MD5 f1865218de9c08a5f4251f725e134126 ChangeLog 4977
-MD5 cb324029606a6b5048895957143c7a44 files/digest-pymol-0.97 64
-MD5 2dbc83e197b07cf99e7b02a03555a3d6 files/digest-pymol-0.98 64
-MD5 925dc45d0ae6070f5506dffc1d100975 files/digest-pymol-0.99_rc6 247
-MD5 9c414f568a3de5c4af6aee28e735a7a3 files/digest-pymol-0.99_rc6-r1 67
-MD5 9c414f568a3de5c4af6aee28e735a7a3 files/digest-pymol-0.99_rc6-r2 67
+AUX header_order.patch 905 RMD160 0a4e2b2f95e2ace2ad21d27740bef5308a4990d5 SHA1 e64d7041acf83bd6c0673e334b52b7d4c24bdc45 SHA256 1f181350c2d99e31c59baea2f31b5ce27b16bae61ce6c9438d2f0e1e903b4cce
 MD5 1a6ba582a7928c370c8dfe44c8867e7c files/header_order.patch 905
+RMD160 0a4e2b2f95e2ace2ad21d27740bef5308a4990d5 files/header_order.patch 905
+SHA256 1f181350c2d99e31c59baea2f31b5ce27b16bae61ce6c9438d2f0e1e903b4cce files/header_order.patch 905
+AUX nosplash-gentoo.patch 332 RMD160 2280fbe9daba8a0d3ca81a3aacfcc55bd06fc7d3 SHA1 275a325f7a9bb076bea72897fd6dd5ed1b014390 SHA256 5e0761591eeea90bcaa06a72c210a80ba46f2542ff985f8dd893af112254a890
 MD5 929741dc2da6577e6e99c5542d68dbd5 files/nosplash-gentoo.patch 332
+RMD160 2280fbe9daba8a0d3ca81a3aacfcc55bd06fc7d3 files/nosplash-gentoo.patch 332
+SHA256 5e0761591eeea90bcaa06a72c210a80ba46f2542ff985f8dd893af112254a890 files/nosplash-gentoo.patch 332
+AUX pymol-0.99_rc6-data-path.patch 2473 RMD160 76847259270179d6b4196d816da777efb9f83698 SHA1 ec41297decfa365363d86f073c3dd04778bece1e SHA256 93714e86fc9ce8137b5ff06b4f1e5897740de1ed80d577f6874d95ea65cc142d
 MD5 035c32a87c619d2c2cf6c0d7466d92e0 files/pymol-0.99_rc6-data-path.patch 2473
+RMD160 76847259270179d6b4196d816da777efb9f83698 files/pymol-0.99_rc6-data-path.patch 2473
+SHA256 93714e86fc9ce8137b5ff06b4f1e5897740de1ed80d577f6874d95ea65cc142d files/pymol-0.99_rc6-data-path.patch 2473
+AUX pymol-gentoo.diff 1566 RMD160 6a566cd0105ba94f9b06be8219c5fbe644281ab9 SHA1 8ba5a779fc06158933115fa7cd0048fbad01507f SHA256 15bdd116551022045c57743f21337c14ca368211a68a2a9763a1a7950f9af9d3
 MD5 34d172ef31b5038e071b634d4e645cf1 files/pymol-gentoo.diff 1566
+RMD160 6a566cd0105ba94f9b06be8219c5fbe644281ab9 files/pymol-gentoo.diff 1566
+SHA256 15bdd116551022045c57743f21337c14ca368211a68a2a9763a1a7950f9af9d3 files/pymol-gentoo.diff 1566
+AUX setup.py-gentoo.patch 311 RMD160 483f63778aa928bf2ce4de99edbc45af98abab8c SHA1 ccb93c7f5c0364ed73fc82b4f0b05508d2bdc519 SHA256 b9131c5852b58db4da37b535a5cf12279e5b436a352ed5ac9680a6fb12b7e911
 MD5 e42746bf581479c61ff1e7cc5b978edd files/setup.py-gentoo.patch 311
+RMD160 483f63778aa928bf2ce4de99edbc45af98abab8c files/setup.py-gentoo.patch 311
+SHA256 b9131c5852b58db4da37b535a5cf12279e5b436a352ed5ac9680a6fb12b7e911 files/setup.py-gentoo.patch 311
+AUX setup2.py-gentoo.patch 493 RMD160 2d6bbabc01f6e4eb8ddafb9b0215ece50a639923 SHA1 f676594a701f3968da190e48cbd531311e0ac0ec SHA256 dc721d4d3fd557c684ddb1ec43e07e05c38f13750393cd1665148e18c5e6a959
 MD5 af2da92225ab57969d18d16ed60324ce files/setup2.py-gentoo.patch 493
-MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+RMD160 2d6bbabc01f6e4eb8ddafb9b0215ece50a639923 files/setup2.py-gentoo.patch 493
+SHA256 dc721d4d3fd557c684ddb1ec43e07e05c38f13750393cd1665148e18c5e6a959 files/setup2.py-gentoo.patch 493
+DIST pymol-0_97-src.tgz 2753262
+DIST pymol-0_98-src.tgz 3033733
+DIST pymol-0_99rc6-src.tgz 4198816 RMD160 e9dc568dd38fffd37f306adf7e7a109d81dd4477 SHA1 dec1dabdf8cd57b1328b24b985b52c88b484ee4b SHA256 d56bebc1316fd3442c54dee5bc4b2979041943bf50a9b34b44839595fd1b9a59
+EBUILD pymol-0.97.ebuild 1131 RMD160 b0488b3652781f924bb09cd8bf50ab64d3ef984c SHA1 84d96e6630d37e35ba3c237d4926ae5d1e5e4ac3 SHA256 3c78bd24c24de4861e5b37925fa872164fa20c032dcea3d30d93bc3900208047
 MD5 2e14ab661047ad8d8c2fe6b21b72c5cc pymol-0.97.ebuild 1131
-MD5 178d73732fb90d64350e98c172b9b594 pymol-0.98.ebuild 1131
-MD5 03c375c56799851b4df5b75cdb5f2720 pymol-0.99_rc6-r1.ebuild 1811
-MD5 6d53dad82375c2a8aac59f780e9dc475 pymol-0.99_rc6-r2.ebuild 2206
-MD5 e339da592644e001ae3b497400f08716 pymol-0.99_rc6.ebuild 1720
+RMD160 b0488b3652781f924bb09cd8bf50ab64d3ef984c pymol-0.97.ebuild 1131
+SHA256 3c78bd24c24de4861e5b37925fa872164fa20c032dcea3d30d93bc3900208047 pymol-0.97.ebuild 1131
+EBUILD pymol-0.98.ebuild 1134 RMD160 e2da7c919c296ef2fc098d2eac3ff106af622908 SHA1 64d0d0cc81075cc2d0b96584421532d71eed2de8 SHA256 3f7b30346d28ef38736f5fdb850a5c650c4ac76b37d6b52b980e7071cc243137
+MD5 ede3c31eeca46a812c12c9263d88ac52 pymol-0.98.ebuild 1134
+RMD160 e2da7c919c296ef2fc098d2eac3ff106af622908 pymol-0.98.ebuild 1134
+SHA256 3f7b30346d28ef38736f5fdb850a5c650c4ac76b37d6b52b980e7071cc243137 pymol-0.98.ebuild 1134
+EBUILD pymol-0.99_rc6-r1.ebuild 1815 RMD160 101a6a3f085f3d6d630d70ece06b48b313dda55e SHA1 764e7544b0bd0317dc36bd6d9098c795ab4c7a71 SHA256 be40a450703a13fcfb69002dfe21150d10c1ae9e78f964d20dadb3cf622e4caa
+MD5 1984b815395b6a438ddbca2f1ba4d450 pymol-0.99_rc6-r1.ebuild 1815
+RMD160 101a6a3f085f3d6d630d70ece06b48b313dda55e pymol-0.99_rc6-r1.ebuild 1815
+SHA256 be40a450703a13fcfb69002dfe21150d10c1ae9e78f964d20dadb3cf622e4caa pymol-0.99_rc6-r1.ebuild 1815
+EBUILD pymol-0.99_rc6-r2.ebuild 2210 RMD160 cbaf134a771b6ffe6efbdd2a41d444e2bd0c0771 SHA1 9bec1df1211f9945dfe1c73a208c8a7a80ef96ec SHA256 cfb67aa6a79c406c5d1ea4e26b6e259ba350f76a04d227b5ac9d7af29633925c
+MD5 852d9e86453f30a0253849a5892a40f3 pymol-0.99_rc6-r2.ebuild 2210
+RMD160 cbaf134a771b6ffe6efbdd2a41d444e2bd0c0771 pymol-0.99_rc6-r2.ebuild 2210
+SHA256 cfb67aa6a79c406c5d1ea4e26b6e259ba350f76a04d227b5ac9d7af29633925c pymol-0.99_rc6-r2.ebuild 2210
+EBUILD pymol-0.99_rc6.ebuild 1724 RMD160 ce326b9d00d3e1f312c99705594e3e6dc9d0b372 SHA1 5ae6054f72808905f4227d2a766c8ad7ba5116d4 SHA256 da66bbf2b4f04ef4392cd81088ad972f3452228d59fe10592d01cf3d7061b35e
+MD5 6ab6285db34b80e93e6c5ea0a4542e9c pymol-0.99_rc6.ebuild 1724
+RMD160 ce326b9d00d3e1f312c99705594e3e6dc9d0b372 pymol-0.99_rc6.ebuild 1724
+SHA256 da66bbf2b4f04ef4392cd81088ad972f3452228d59fe10592d01cf3d7061b35e pymol-0.99_rc6.ebuild 1724
+MISC ChangeLog 5332 RMD160 016c9ba0b80ecd83506c185547fe62385eade77a SHA1 5c5f4fb13ffd4233d55ffec84cd36152053ff01c SHA256 49d6f35f2f66472ed5c7ad86412a698d28eeeb01681ab66d5140be75529a5d9a
+MD5 a14ef39e89cff5f19544e3019c2a11ec ChangeLog 5332
+RMD160 016c9ba0b80ecd83506c185547fe62385eade77a ChangeLog 5332
+SHA256 49d6f35f2f66472ed5c7ad86412a698d28eeeb01681ab66d5140be75529a5d9a ChangeLog 5332
+MISC metadata.xml 156 RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 SHA1 da2b240a255820145b7c83a5c48e45b96b7e9ee6 SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900
+MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
+RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 metadata.xml 156
+SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900 metadata.xml 156
+MD5 cb324029606a6b5048895957143c7a44 files/digest-pymol-0.97 64
+RMD160 82bd85bb8c6cbae6f0b60382383798597836fab8 files/digest-pymol-0.97 64
+SHA256 963decc23698c04c8b1c6f8cd457331cf482907de2d5418a9caae7f6dff904d4 files/digest-pymol-0.97 64
+MD5 2dbc83e197b07cf99e7b02a03555a3d6 files/digest-pymol-0.98 64
+RMD160 ba61ec28c84e18d817ad92408f30138f886bad6f files/digest-pymol-0.98 64
+SHA256 469c60f72347e1f9b0d544866d26bf615b7e6c424da4a28b8bbfd7fba6d6e839 files/digest-pymol-0.98 64
+MD5 925dc45d0ae6070f5506dffc1d100975 files/digest-pymol-0.99_rc6 247
+RMD160 505a34a7bebbbdd2c60913ea3ec7cd41164eeaff files/digest-pymol-0.99_rc6 247
+SHA256 4644dbddb3d8af1a2956282b351c228ded4ebb2fe628a571e0e929922a1b485a files/digest-pymol-0.99_rc6 247
+MD5 925dc45d0ae6070f5506dffc1d100975 files/digest-pymol-0.99_rc6-r1 247
+RMD160 505a34a7bebbbdd2c60913ea3ec7cd41164eeaff files/digest-pymol-0.99_rc6-r1 247
+SHA256 4644dbddb3d8af1a2956282b351c228ded4ebb2fe628a571e0e929922a1b485a files/digest-pymol-0.99_rc6-r1 247
+MD5 925dc45d0ae6070f5506dffc1d100975 files/digest-pymol-0.99_rc6-r2 247
+RMD160 505a34a7bebbbdd2c60913ea3ec7cd41164eeaff files/digest-pymol-0.99_rc6-r2 247
+SHA256 4644dbddb3d8af1a2956282b351c228ded4ebb2fe628a571e0e929922a1b485a files/digest-pymol-0.99_rc6-r2 247