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author | 2009-04-26 11:21:05 +0200 | |
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committer | 2009-04-26 11:21:05 +0200 | |
commit | 3a500416770ff4296e365fc53d9c67f03afa9d51 (patch) | |
tree | bbdea8bac278cd371001dc44dc7353f658eeba7e /scripts | |
parent | first version of automatic bump script for blast-dbs checked in (diff) | |
download | sci-3a500416770ff4296e365fc53d9c67f03afa9d51.tar.gz sci-3a500416770ff4296e365fc53d9c67f03afa9d51.tar.bz2 sci-3a500416770ff4296e365fc53d9c67f03afa9d51.zip |
moved scripts from Documentation to scripts
Diffstat (limited to 'scripts')
-rw-r--r-- | scripts/generate_boinc-src_tarball.sh | 126 | ||||
-rwxr-xr-x | scripts/stage-db | 41 |
2 files changed, 167 insertions, 0 deletions
diff --git a/scripts/generate_boinc-src_tarball.sh b/scripts/generate_boinc-src_tarball.sh new file mode 100644 index 000000000..0099ce9e8 --- /dev/null +++ b/scripts/generate_boinc-src_tarball.sh @@ -0,0 +1,126 @@ +#!/usr/bin/env bash +## $Id: export-tarball 8916 2005-11-23 18:09:55Z korpela $ +## Modified by jlec 2009-04-13 +############################################################################### +# functions +############################################################################### +# print out help function +help() { + echo "Welcome to Boinc tarball generator" + echo + echo "For correct usage set VERSION argument" + echo "Example:" + echo "$0 -v 6.1.1" + exit 0 +} +############################################################################### +# argument passing +############################################################################### +if [[ $1 == "--help" ]]; then + help +fi +while getopts v: arg ; do + case $arg in + v) VERSION=${OPTARG};; + *) help;; + esac +done +if [ -z "${VERSION}" ]; then + help +fi +############################################################################### +# variable definition +############################################################################### +SVN_URI="http://boinc.berkeley.edu/svn/tags/boinc_core_release_${VERSION//./_}" +PACKAGE="boinc-${VERSION}" +BUNDLE_PREFIX="boinc-dist" +LOG=linux.log +############################################################################### +# prepare enviroment +############################################################################### +mkdir ${BUNDLE_PREFIX} -p +rm -rf $PACKAGE/"${BUNDLE_PREFIX}"/* # CLEANUP +cd "${BUNDLE_PREFIX}" +touch "${LOG}" +echo "" > "${LOG}" # LOG CLEANUP +############################################################################### +# get data from svn +############################################################################### +echo "<Downloading files from SVN repository>" +echo "<******************************>" +svn export ${SVN_URI} ${PACKAGE} >> "${LOG}" +############################################################################### +# cleanup files we fetched +############################################################################### +echo "<Cleaning up data we fetched>" +echo "<******************************>" +# we create tarball for linux so cleanup mess +# bundled zlib library +rm -rf $PACKAGE/zlib/ +# bundled zip libs +rm -rf $PACKAGE/zip/{zip,unzip} +# bundled openssl stuff +rm -rf $PACKAGE/openssl/ +# smash html +rm -rf $PACKAGE/html/ +# bundled curl +rm -rf $PACKAGE/curl/ +# other platforms stuff +rm -rf $PACKAGE/win_build/ +rm -rf $PACKAGE/mac_{installer,build}/ +rm -rf $PACKAGE/clientgui/{mac,msw}/ +rm -rf $PACKAGE/client/{os2,win}/ +rm -rf $PACKAGE/lib/mac/ +# we never ever will do documentation stuff +rm -rf $PACKAGE/doc/ + +# fix search for unwanted stuff +sed -i \ + -e '/^.\/unzip/d' \ + -e '/^.\/zip/d' \ + -e '/^SUBDIRS/d' \ + -e "s:-I\$(top_srcdir)/zip/zip::g" \ + -e "s:-I\$(top_srcdir)/zlib::g" \ + -e "s:-I\$(top_srcdir)/zip/unzip::g" \ + -e 's:\\::g' \ + "$PACKAGE"/zip/Makefile.am +echo 'libboinc_zip_a_LIBADD = $(libdir)/libunzip.a $(libdir)/libzip.a' >> \ + "$PACKAGE"/zip/Makefile.am +sed -i \ + -e 's:"./zip/zip.h":<zip.h>:g' \ + -e 's:"./unzip/unzip.h":<unzip.h>:g' \ + "$PACKAGE"/zip/*.cpp +sed -i \ + -e "s:win_build::g" \ + -e "s:doc::g" \ + "$PACKAGE"/Makefile.am +sed -i \ + -e "s:zip/unzip/Makefile::g" \ + -e "s:zip/zip/Makefile::g" \ + -e "s:doc/manpages/Makefile::g" \ + -e "s:doc/Makefile::g" \ + -e "sXclient/win/boinc_path_config.py:py/Boinc/boinc_path_config.py.inXXg" \ + "$PACKAGE"/configure.ac +# fix the server build +sed -i \ + -e "s:samples/example_app::g" \ + "$PACKAGE"/Makefile.am +sed -i \ + -e "s:sched apps tools samples/example_app:sched apps tools:g" \ + "$PACKAGE"/Makefile.in +pushd "$PACKAGE"/ +./_autosetup +popd +############################################################################### +# create tbz +############################################################################### +tar cjf "${PACKAGE}".tar.bz2 ${PACKAGE} >> "${LOG}" +find ./ -maxdepth 1 -type f -name \*.tar.bz2 -print | while read FILE ; do + echo "FILE: ${FILE}" + echo " SIZE: $(`which du` -h ${FILE} |`which awk` -F' ' '{print $1}')" + echo " MD5SUM: $(`which md5sum` ${FILE} |`which awk` -F' ' '{print $1}')" + echo " SHA1SUM: $(`which sha1sum` ${FILE} |`which awk` -F' ' '{print $1}')" + echo +done +echo "<<<All done>>>" +############################################################################### diff --git a/scripts/stage-db b/scripts/stage-db new file mode 100755 index 000000000..e3722cfee --- /dev/null +++ b/scripts/stage-db @@ -0,0 +1,41 @@ +#!/bin/bash + +DATE=$(date "+%Y%m%d") +CHANGE_ENTRY="automatic bump" + +# Find the Documentation dir from sci overlay + +if [[ -f $(basename $0) ]]; then + REPO_DOC=$(pwd) +else + REPO_DOC=$(dirname $0) +fi + + +cd /tmp; +wget http://www.ncbi.nlm.nih.gov/blast/docs/update_blastdb.pl >& /dev/null + +# Ask for which database + +echo "Which db should be updated ?" +echo "" +perl -w update_blastdb.pl --passiv --showall +echo "" +read DB + + +# Fetch the database and rename it + +perl -w update_blastdb.pl --passiv ${DB} + +for mydb in ${DB}*; do + mv ${mydb} ${mydb#.tar.gz}-${DATE}.tar.gz +done + +cd ${REPO_DOC}/../sci-libs/blast-db-${DB}; +git mv blast-db-${DB}*ebuild blast-db-${DB}-${DATE}.ebuild +git add . +echangelog "${CHANGE_ENTRY}" +reapoman -d -v fix +git add . + |