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authorDavid Seifert <soap@gentoo.org>2023-05-11 11:23:44 +0200
committerDavid Seifert <soap@gentoo.org>2023-05-11 11:23:44 +0200
commitf8f5c9b4a76934fd2c2f4774aa63bf6a1a40ff6e (patch)
tree9bf5bbfe21a8affe4eaea4f8ff65596a4e994226 /dev-lang/R
parentdev-lang/R: add 4.3.0 (diff)
downloadgentoo-f8f5c9b4a76934fd2c2f4774aa63bf6a1a40ff6e.tar.gz
gentoo-f8f5c9b4a76934fd2c2f4774aa63bf6a1a40ff6e.tar.bz2
gentoo-f8f5c9b4a76934fd2c2f4774aa63bf6a1a40ff6e.zip
dev-lang/R: drop 4.2.1, 4.2.2
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'dev-lang/R')
-rw-r--r--dev-lang/R/Manifest2
-rw-r--r--dev-lang/R/R-4.2.1.ebuild250
-rw-r--r--dev-lang/R/R-4.2.2.ebuild248
-rw-r--r--dev-lang/R/files/R-3.4.1-rmath-shared.patch21
-rw-r--r--dev-lang/R/files/R-4.2.1-reg-packages-testfix.patch25
5 files changed, 0 insertions, 546 deletions
diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest
index cb99b76da339..66ca1dcf1a07 100644
--- a/dev-lang/R/Manifest
+++ b/dev-lang/R/Manifest
@@ -1,5 +1,3 @@
-DIST R-4.2.1.tar.gz 37601544 BLAKE2B b898262a05c92e125c36a661a89be34b1698177832002f7aa21ccfcf0b30a06481e2154eea9e77a94b1ad8ca35c7bc4aead2be99b862dca7450acee1bec6a99f SHA512 c1baf46d22304c425dde79301183f80f99f2752300137b0b6f902c3e55e2419d5e9185c97de6e3c840a38f6345a6c334aa24161656d4a7f6fa01570390f1122f
-DIST R-4.2.2.tar.gz 33987014 BLAKE2B 083d07b055308451e32133d378abc4aea7dd6da341554dca96ed5863fe2bc937aa3faa94bbd8d3620d3e6e020f806975cbc375ca28c599bd645267b97b2a49d4 SHA512 abbf1c7d016f8e1a9a0c4ad5dee2509a164449da34729f3e98d99ad8678ab398005fb8ed20288d4a6ed1e46ad4c70ad246f31a1a07aab99ba8fc6a5f02e1a309
DIST R-4.2.3.tar.gz 34010655 BLAKE2B 688403c693de348bdc404c0ebc2df08d3415db216f6017beca8c0408dc70830239ba26ff89f020a249c8af6471363ed742f52c816da84aac8161ec4a522df405 SHA512 060bb4e1d1f1a5a0383a3b4372ac9247c0a20285020da17cebeb40ddc54da12d5f369ea243ea04d2c6970986fe22b3f9c37fbdfb3405cd8aa4f2353091ea9c5c
DIST R-4.3.0.tar.gz 34821768 BLAKE2B 3505c8357419355fddb8aadbf0952c492e3e38d649d6261478d6187c94ff71110089ec0933a31dd2f7258e58a1d0864a68cb4d7b6cdefc54e5add55d0d62db10 SHA512 7f9bc8360818d7fdf05e26a4213df01468669514a4c2ad62dee358f53dcfa05a71ee72241db91fed59574c26d7caee5d3e0717637e1666daec99446e42c07813
DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06
diff --git a/dev-lang/R/R-4.2.1.ebuild b/dev-lang/R/R-4.2.1.ebuild
deleted file mode 100644
index 0fda9d9aacd0..000000000000
--- a/dev-lang/R/R-4.2.1.ebuild
+++ /dev/null
@@ -1,250 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion: https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="amd64 arm64 ~hppa ~ia64 sparc x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( media-libs/libjpeg-turbo:= )
- kernel_linux? ( net-libs/libtirpc )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- x11-misc/xdg-utils
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-
-PATCHES=(
- "${FILESDIR}"/R-3.4.1-parallel.patch
- "${FILESDIR}"/R-3.4.1-rmath-shared.patch
- "${FILESDIR}"/R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/R-3.6.2-no-gzip-doc.patch
- "${FILESDIR}"/R-4.2.1-reg-packages-testfix.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack &&
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- if use X; then
- export R_BROWSER="$(type -p xdg-open)"
- export R_PDFVIEWER="$(type -p xdg-open)"
- fi
- use perl &&
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -j1 -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
- R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x /usr/share/doc/${PF}/${f}
- done
-
- # Finally, an extra copy of this started showing up at some point...
- rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/R-4.2.2.ebuild b/dev-lang/R/R-4.2.2.ebuild
deleted file mode 100644
index 0ccb36ebf04c..000000000000
--- a/dev-lang/R/R-4.2.2.ebuild
+++ /dev/null
@@ -1,248 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-inherit bash-completion-r1 autotools flag-o-matic fortran-2 toolchain-funcs
-
-# latest git commit for R bash completion:
-# https://github.com/deepayan/rcompletion
-BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6
-
-DESCRIPTION="Language and environment for statistical computing and graphics"
-HOMEPAGE="https://www.r-project.org/"
-SRC_URI="
- mirror://cran/src/base/R-4/${P}.tar.gz
- https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion"
-
-LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1"
-SLOT="0"
-KEYWORDS="~amd64 ~arm64 ~hppa ~ia64 ~loong ~sparc ~x86 ~amd64-linux ~x86-linux"
-IUSE="cairo doc icu java jpeg lapack lto minimal nls openmp perl png prefix profile readline test tiff tk X"
-
-REQUIRED_USE="
- png? ( || ( cairo X ) )
- jpeg? ( || ( cairo X ) )
- tiff? ( || ( cairo X ) )"
-RESTRICT="
- minimal? ( test )
- !test? ( test )"
-
-# At least one package installation in the test suite requires TeX,
-# and will fail without it (bug #718056).
-DEPEND="
- app-arch/bzip2
- app-arch/xz-utils
- app-text/ghostscript-gpl
- dev-libs/libpcre2:=
- >=dev-libs/tre-0.8.0_p20210321[approx]
- net-misc/curl
- virtual/blas
- sys-libs/zlib[minizip]
- || (
- sys-apps/coreutils
- app-misc/realpath
- )
- cairo? (
- x11-libs/cairo:=[X=]
- x11-libs/pango:=
- )
- icu? ( dev-libs/icu:= )
- jpeg? ( media-libs/libjpeg-turbo:= )
- kernel_linux? ( net-libs/libtirpc )
- lapack? ( virtual/lapack )
- perl? ( dev-lang/perl )
- png? ( media-libs/libpng:= )
- readline? ( sys-libs/readline:= )
- tiff? ( media-libs/tiff:= )
- tk? ( dev-lang/tk:= )
- X? (
- x11-libs/libXmu
- x11-libs/libXt
- )"
-RDEPEND="${DEPEND}
- java? ( >=virtual/jre-1.8:* )"
-BDEPEND="
- virtual/pkgconfig
- doc? (
- virtual/latex-base
- dev-texlive/texlive-fontsrecommended
- )
- test? ( virtual/latex-base )"
-
-PATCHES=(
- "${FILESDIR}"/R-3.4.1-parallel.patch
- "${FILESDIR}"/R-3.4.1-rmath-shared.patch
- "${FILESDIR}"/R-3.6.2-no-LDFLAGS-in-libR-pkg-config.patch
- "${FILESDIR}"/R-3.6.2-no-gzip-doc.patch
- "${FILESDIR}"/R-4.2.2-browser-pdf-prefs.patch
- "${FILESDIR}"/R-4.2.2-isspace-without-readline.patch
- "${FILESDIR}/"R-4.2.2-parallel-rmath-h-install.patch
-)
-
-pkg_pretend() {
- [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
-}
-
-pkg_setup() {
- if [[ ${MERGE_TYPE} != binary ]] && use openmp; then
- tc-check-openmp
- FORTRAN_NEED_OPENMP=1
- fi
-
- fortran-2_pkg_setup
-
- # avoid using existing R installation
- unset R_HOME
-}
-
-src_prepare() {
- default
-
- # fix packages.html for doc (gentoo bug #205103)
- sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \
- -i src/library/tools/R/Rd.R || die
-
- # fix Rscript path when installed (gentoo bug #221061)
- sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EPREFIX}/usr/$(get_libdir)/${PN}\"':" \
- -i src/unix/Makefile.in || die "sed unix Makefile failed"
-
- # fix HTML links to manual (gentoo bug #273957)
- sed -e 's:\.\./manual/:manual/:g' \
- -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed"
-
- use lapack &&
- export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)"
-
- use perl &&
- export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}"
-
- # don't search /usr/local
- sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die
-
- # Fix for Darwin (macOS)
- if use prefix; then
- if [[ ${CHOST} == *-darwin* ]] ; then
- sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \
- -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \
- -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \
- -e "/SHLIB_EXT/s/\.so/.dylib/" \
- -i configure.ac || die
- # sort of "undo" 2.14.1-rmath-shared.patch
- sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EPREFIX}/usr/$(get_libdir)/libRmath.dylib:" \
- -i src/nmath/standalone/Makefile.in || die
- else
- append-ldflags -Wl,-rpath="${EPREFIX}/usr/$(get_libdir)/R/lib"
- fi
- fi
-
- AT_M4DIR=m4 eautoreconf
-}
-
-src_configure() {
- filter-ldflags -Wl,-Bdirect -Bdirect
-
- econf \
- --enable-byte-compiled-packages \
- --enable-R-shlib \
- --disable-R-framework \
- --disable-R-static-lib \
- --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \
- rdocdir="${EPREFIX}/usr/share/doc/${PF}" \
- --with-system-tre \
- $(use_enable java) \
- $(use_enable lto lto R) \
- $(use_enable nls) \
- $(use_enable openmp) \
- $(use_enable profile R-profiling) \
- $(use_enable profile memory-profiling) \
- $(use_with cairo) \
- $(use_with icu ICU) \
- $(use_with jpeg jpeglib) \
- $(use_with lapack) \
- $(use_with !minimal recommended-packages) \
- $(use_with png libpng) \
- $(use_with readline) \
- $(use_with tiff libtiff) \
- $(use_with tk tcltk) \
- $(use_with tk tk-config "${ESYSROOT}"/usr/$(get_libdir)/tkConfig.sh) \
- $(use_with tk tcl-config "${ESYSROOT}"/usr/$(get_libdir)/tclConfig.sh) \
- $(use_with X x)
-}
-
-src_compile() {
- export VARTEXFONTS="${T}"/fonts
- emake AR="$(tc-getAR)"
- emake -C src/nmath/standalone shared AR="$(tc-getAR)"
- use doc && emake info pdf
-}
-
-src_install() {
- default
- emake -C src/nmath/standalone DESTDIR="${D}" install
-
- if use doc; then
- emake DESTDIR="${D}" install-info install-pdf
- dosym ../manual /usr/share/doc/${PF}/html/manual
- fi
-
- newenvd - 99R <<-_EOF_
- LDPATH="${EPREFIX}/usr/$(get_libdir)/${PN}/lib"
- R_HOME="${EPREFIX}/usr/$(get_libdir)/${PN}"
- _EOF_
-
- newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN}
- # The buildsystem has a different understanding of install_names than
- # we require. Since it builds modules like shared objects (wrong), many
- # objects (all modules) get an incorrect install_name. Fixing the build
- # system here is not really trivial.
- if [[ ${CHOST} == *-darwin* ]] ; then
- local mod
- pushd "${ED}"/usr/$(get_libdir)/R >/dev/null || die
- for mod in $(find . -name "*.dylib") ; do
- mod=${mod#./}
- install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" "${mod}"
- done
- popd >/dev/null || die
- fi
-
- # Users are encouraged to access some of the the R documentation
- # interactively, through functions like "contributors()" that
- # tries to open the "AUTHORS" file. Other files can be accessed
- # by name with RShowDoc(), and the documentation for e.g. license()
- # and RShowDoc() suggests a few of these names. Here we try to
- # collect as many names as possible that a user might actually
- # try to view through R, because if we don't decompress them,
- # then R doesn't know what to do with 'em. Bug #556706.
- local INTERACTIVE_DOCS=(
- AUTHORS
- COPYING
- FAQ
- NEWS
- THANKS
- )
-
- # Other data sources that are shipped as "documentation," but which
- # need to be accessible via their original unmolested filenames.
- local INTERACTIVE_DATA=(
- BioC_mirrors.csv
- CRAN_mirrors.csv
- KEYWORDS.db
- NEWS.rds
- )
-
- local f NOCOMPRESS_DOCS=( "${INTERACTIVE_DOCS[@]}" "${INTERACTIVE_DATA[@]}" )
- for f in "${NOCOMPRESS_DOCS[@]}"; do
- docompress -x /usr/share/doc/${PF}/${f}
- done
-
- # Finally, an extra copy of this started showing up at some point...
- rm "${ED}"/usr/$(get_libdir)/R/COPYING || die
-}
-
-pkg_postinst() {
- if use java; then
- einfo "Re-initializing java paths for ${P}"
- R CMD javareconf
- fi
-}
diff --git a/dev-lang/R/files/R-3.4.1-rmath-shared.patch b/dev-lang/R/files/R-3.4.1-rmath-shared.patch
deleted file mode 100644
index 8bc6233de6df..000000000000
--- a/dev-lang/R/files/R-3.4.1-rmath-shared.patch
+++ /dev/null
@@ -1,21 +0,0 @@
---- a/src/nmath/standalone/Makefile.in 2017-07-05 23:20:26.098087600 +0000
-+++ b/src/nmath/standalone/Makefile.in 2017-07-05 23:21:55.087480310 +0000
-@@ -64,7 +64,8 @@
- Rexeclibdir_LTLIBRARIES = $(libRmath_la)
- libRmath_la_SOURCES = $(SOURCES)
- libRmath_la_OBJECTS = $(OBJECTS:.o=.lo)
--libRmath_la_LDFLAGS =
-+libRmath_la_LDFLAGS = -Wl,-soname=libRmath.so
-+libRmath_la_LIBADD = $(LIBM)
-
- CLEANFILES = Makedeps *.d *.o *.lo test check.log $(SOURCES)
- DISTCLEANFILES = Makefile $(Rexeclibdir_LIBRARIES) $(Rexeclibdir_LTLIBRARIES)
-@@ -127,7 +128,7 @@
-
- ## under peculiar circumstances, $(LIBM) here helps.
- $(libRmath_la): $(libRmath_la_OBJECTS)
-- $(DYLIB_LINK) -o $@ $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) $(LIBM)
-+ $(DYLIB_LINK) $(libRmath_la_LDFLAGS) $(libRmath_la_OBJECTS) $(libRmath_la_LIBADD) -o $@
-
- test: $(srcdir)/test.c
- $(CC) -o $@ $(ALL_CPPFLAGS) $(ALL_CFLAGS) $(srcdir)/test.c \
diff --git a/dev-lang/R/files/R-4.2.1-reg-packages-testfix.patch b/dev-lang/R/files/R-4.2.1-reg-packages-testfix.patch
deleted file mode 100644
index f5fe9667ad67..000000000000
--- a/dev-lang/R/files/R-4.2.1-reg-packages-testfix.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-diff --git a/tests/reg-packages.R b/tests/reg-packages.R
-index c9962ce..2d36d1e 100644
---- a/tests/reg-packages.R
-+++ b/tests/reg-packages.R
-@@ -260,7 +260,8 @@ stopifnot(exprs = {
- (lenN <- length(print(iN <- grep("^[1-9][0-9]:", tlines)))) >= 2
- iN - iw == seq_len(lenN) # these (3) lines come immediately after 'Warning',
- ## and "related" to the some 'missing .. paren' above:
-- 8 <= print(iw - i) & iw - i <= 20 # see ~14
-+ !is.na(ierr <- as.integer(substr(print(tlines[iN[1]]), 1, 2)))
-+ 8 <= print(ierr - i) & ierr - i <= 14 # see 11
- }) ## failed in R <= 4.1.1
-
-
-@@ -495,8 +496,8 @@ checkMatrix(ap, 4)
-
-
- ## clean up
--rmL <- c("myLib", if(has.symlink) "myLib_2", "myTst", file.path(pkgPath),
-- oldpkgdir, newpkgdir, repodir, backupPfiles)
-+rmL <- c("myLib", if(has.symlink) "myLib_2", "myTst", "myTst2",
-+ "PR17501.Rcheck")
- if(do.cleanup) {
- for(nm in rmL) unlink(nm, recursive = TRUE)
- } else {