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authorJustin Lecher <jlec@gentoo.org>2017-01-02 21:52:30 +0000
committerJustin Lecher <jlec@gentoo.org>2017-01-02 22:09:06 +0000
commit7e87f658f887ff9c3af76e3175fa3aa2912adf54 (patch)
treefcfe27312f21f401e67d08c7e1adb026d44a1e13 /sci-biology
parentsci-biology/biopython: Drop old (diff)
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sci-biology/rebase: Drop old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/Manifest5
-rw-r--r--sci-biology/rebase/rebase-1602.ebuild46
-rw-r--r--sci-biology/rebase/rebase-1604.ebuild46
-rw-r--r--sci-biology/rebase/rebase-1608.ebuild46
-rw-r--r--sci-biology/rebase/rebase-1609.ebuild46
-rw-r--r--sci-biology/rebase/rebase-1611.ebuild46
6 files changed, 0 insertions, 235 deletions
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index c298e33d0d41..00e400e4958f 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,8 +1,3 @@
-DIST rebase-1602.tar.xz 101007300 SHA256 26257dc10a6aba54024772956ae03e8530d4b2176db60dcc386427196a936d0b SHA512 7a00a11019124a835ef3d328c33cc4ab9d59665b3c929cf02a44bc09de8ca53185b939057705ee6ce79eeddc9ca9b8246582895b949dd38abe9066a380e3a2c9 WHIRLPOOL fac62146ab6ff09895cc9e4ece2b4869910c90c342051c5446085267585362adcc8a30af66a58d068d86c3eb6e7a37ceb32224a69114aa629a62a958fae09ed0
-DIST rebase-1604.tar.xz 102817536 SHA256 f234eadba5aa30573d664c9d9caab480ecbb383f0beab256e149296ee5d982ef SHA512 8ba6a24a8cf1b71a1ac2e0fb1634c0307d570af459fc940639046bd57362f3750e5f0390bcb7f3c7d2b924e1a5bf02825b5feb87a1f7d670d755f3b843df91a3 WHIRLPOOL 8ccaf435d7582fe1b86676037aaf7b0db742cd8d998a55d400f941a94e53731e1814028e1fed1be46f53bea702b570a1bffd73ba328ee06db17adcd731e3733c
DIST rebase-1607.tar.xz 111124484 SHA256 2d795db3cc8cf7ff22eda983334e480b9c7b61c5b5ed9d38e2d626489fc4cefe SHA512 b166f75d6d82efe68f9e2521e26c7dc1bf34dde168d6eb94195f2f938316b0c7d06a11684de7d71e9bef2f3051a12c848c87a0d48bb6e148f6f84e9f694ced48 WHIRLPOOL 823054e6b366b707ba1be105fd6172f315358ba07ac8cfb7bbafdac3b9f14718e3406bb4b1c048b18dc8422ead4da09512b61758470bd5ca6a8d9141ebb5c578
-DIST rebase-1608.tar.xz 113417576 SHA256 ce8872adbe09c756af4bded43bde43e45d82b14642454fad05da8deef271bb81 SHA512 989d353cb9d73039d6c08805c4d32dbef1bdd37683f4c2ead5fa4889eae05bf3bdba54214d199b87961d8ace4d950f21dbc749e955867f8c6ccac766c7a06520 WHIRLPOOL bc89aa9230680ac08d3c17f7068bb45cb28dbf45038ffda5c2b4660fe366cdc32376ca32439953a2faa7524c6a5c4811a124288b85cf8320ef324458e3957d70
-DIST rebase-1609.tar.xz 140865364 SHA256 0799f4a1dae79eaea6629425f6dae104951b94777dc58866adceb4277c577f51 SHA512 3a06a67c7df78f3eb6214dece1f2045ce2610cf34efc8f9eb34b97ca2aa818ea9b52124da1b44895a5a53ec45b19bb78f0cc036b2053e28f1cb72087cd42ad35 WHIRLPOOL fcd5ff5674465cab269dbe8c4f7e5c2c33f6b3b2a515e3f1c1a8c8b60fc68ecca1f48ea4c363ce52b77ddfd50e8fc9c22aad69b7ebc190ccdcfcd2b52d3bc27b
-DIST rebase-1611.tar.xz 117976252 SHA256 fcfe506c8f018b8d7b43c5f87e4125310e43d2d2ea5f3ea6b3523f9d23ae7d1c SHA512 33287d497e399a7cfb8e7dc6e2b905553303b4b8dce49066eafc3f48cac47e9e3fd8c8736a7a0352ed5fd5da39aca220ed59884f887a5588cedc2d5e56b6e764 WHIRLPOOL 52758d6017e0725bd2f84cb2cd4f16b3965a21f45a664ed71078d50b95a64664239936a605052bc3b34ef67e70cb96fd5b1e2005bdc699be9cff9f919b197734
DIST rebase-1612.tar.xz 122519992 SHA256 eb94346564c43244c5959b5948fe59f0ebe9e2590978f1ec8787a3395e918368 SHA512 3936749465f828d1b5922b4c75635a678e2e865cef88084d819291227bd1404e56edbc208e986a7373c32ff0172709cfcb8c4343f8512fbdacf39666f97c5026 WHIRLPOOL 729aa68437b48e3bcbaaf3747feaaf7090a612d2a05658a28ca74b8c58b3227718b0ca9d17a9d5caba42ba02cb6d11fe8bc34796bf385a8310bed2aecae20985
DIST rebase-1701.tar.xz 120604368 SHA256 cc8cf90f874dcb179b9f7654780ff783066fa6a67fffb90d6ac08d2917fa671b SHA512 1833db9d78508bbd5317f9b42b0e8129096f1695d5a14d5e2b6043bc94091a76ac404c576ad622be4e32c46aff7975a7ec3e36c3da71ce3ce1665868ee0d77cb WHIRLPOOL 641b755b92e8aa9ca2d9a69760d0414a95f38512fa235a9856a953398d5ab0c853bb4743f6790aada1d90f968bfaa76c0651aadea842fff9700941c506a29ecd
diff --git a/sci-biology/rebase/rebase-1602.ebuild b/sci-biology/rebase/rebase-1602.ebuild
deleted file mode 100644
index 875464d50ed0..000000000000
--- a/sci-biology/rebase/rebase-1602.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1604.ebuild b/sci-biology/rebase/rebase-1604.ebuild
deleted file mode 100644
index 436b460d7080..000000000000
--- a/sci-biology/rebase/rebase-1604.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1608.ebuild b/sci-biology/rebase/rebase-1608.ebuild
deleted file mode 100644
index 9adb365ae5f1..000000000000
--- a/sci-biology/rebase/rebase-1608.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1609.ebuild b/sci-biology/rebase/rebase-1609.ebuild
deleted file mode 100644
index 47f2e4366830..000000000000
--- a/sci-biology/rebase/rebase-1609.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}
diff --git a/sci-biology/rebase/rebase-1611.ebuild b/sci-biology/rebase/rebase-1611.ebuild
deleted file mode 100644
index 47f2e4366830..000000000000
--- a/sci-biology/rebase/rebase-1611.ebuild
+++ /dev/null
@@ -1,46 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=6
-
-MY_PV=${PV#1}
-
-DESCRIPTION="A restriction enzyme database"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
-
-SLOT="0"
-LICENSE="public-domain"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
-IUSE="emboss minimal"
-
-RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-DEPEND="${RDEPEND}"
-
-RESTRICT="binchecks strip"
-
-src_compile() {
- if use emboss; then
- echo; einfo "Indexing Rebase for usage with EMBOSS."
- mkdir REBASE || die
- EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
- -protofile proto.${MY_PV} -equivalences \
- || die "Indexing Rebase failed."
- echo
- fi
-}
-
-src_install() {
- if ! use minimal; then
- insinto /usr/share/${PN}
- doins withrefm.${MY_PV} proto.${MY_PV}
- fi
- newdoc REBASE.DOC README
- if use emboss; then
- insinto /usr/share/EMBOSS/data/REBASE
- doins REBASE/embossre.{enz,ref,sup}
- insinto /usr/share/EMBOSS/data
- doins REBASE/embossre.equ
- fi
-}