proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

4 files changed, 87 insertions, 0 deletions

diff --git a/sci-chemistry/p3d/Manifest b/sci-chemistry/p3d/Manifest
new file mode 100644
index 000000000000..9b2f9b5b9c4d
--- /dev/null
+++ b/sci-chemistry/p3d/Manifest
@@ -0,0 +1 @@
+DIST p3d-0.4.3.tar.gz 7213577 RMD160 2a251097bf7f83b27e519b20e4110fe330b2b6a3 SHA1 ced099dcaa28517c6095c1153f3a19bb6c78494c SHA256 b968eb37c0d27ad1f4f46f8a942fb2b62fbcdb50b31a1e66875e2cdc036a9932
diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml
new file mode 100644
index 000000000000..bd602bd0e68a
--- /dev/null
+++ b/sci-chemistry/p3d/metadata.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci-chemistry</herd>
+	<maintainer>
+		<email>jlec@gentoo.org</email>
+	</maintainer>
+	<longdescription>
+p3d was developed in order to offer a Python module that is powerful and fast,
+yet intuitive to use. The simplicity of p3d is due to the usage of object 
+oriented programming (i.e. atoms are treated as vectors), the implementation 
+of a query parser that translates queries readable by humans into a combination
+of algebra set operations the fact that no additional Python packages are 
+necessary. The speed is due to the usage of a binary space partitioning (BSP)
+tree which allows very fast queries in 3D (Henry et al. 1980). The additional 
+synergy is obtained by the flexible combination of both speed and complexity in
+the queries to the structural data. The combination of these factors makes p3d
+the optimal module to rapidly develop new and powerful bioinformatic tools that
+follow the Python philosophy of making the source code readable.
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/p3d/p3d-0.4.3.ebuild b/sci-chemistry/p3d/p3d-0.4.3.ebuild
new file mode 100644
index 000000000000..294acb075860
--- /dev/null
+++ b/sci-chemistry/p3d/p3d-0.4.3.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit distutils versionator
+
+MY_P="${PN}-$(replace_version_separator 3 -)"
+GITHUB_ID="gb8b9a75"
+
+DESCRIPTION="Python module for structural bioinformatics"
+HOMEPAGE="http://p3d.fufezan.net/"
+SRC_URI="https://nodeload.github.com/fu/${PN}/tarball/${PV} -> ${P}.tar.gz"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+LICENSE="GPL-3"
+IUSE="examples"
+
+src_prepare() {
+	mv fu* ${P}
+	distutils_src_prepare
+}
+
+src_install() {
+	distutils_src_install
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r pdbs exampleScripts || die
+	fi
+}
diff --git a/sci-chemistry/p3d/p3d-9999.ebuild b/sci-chemistry/p3d/p3d-9999.ebuild
new file mode 100644
index 000000000000..e0f8087a0cc2
--- /dev/null
+++ b/sci-chemistry/p3d/p3d-9999.ebuild
@@ -0,0 +1,30 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=3
+
+PYTHON_DEPEND="2"
+SUPPORT_PYTHON_ABIS="1"
+
+inherit git-2 distutils versionator
+
+DESCRIPTION="Python module for structural bioinformatics"
+HOMEPAGE="http://p3d.fufezan.net/"
+SRC_URI=""
+EGIT_REPO_URI="git://github.com/fu/p3d.git"
+
+SLOT="0"
+KEYWORDS=""
+LICENSE="GPL-3"
+IUSE="examples"
+
+S="${WORKDIR}"/${PN}
+
+src_install() {
+	distutils_src_install
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r pdbs exampleScripts || die
+	fi
+}