diff options
129 files changed, 0 insertions, 3958 deletions
diff --git a/app-backup/holland-backup-example/Manifest b/app-backup/holland-backup-example/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-backup-example/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-backup-example/holland-backup-example-1.0.10.ebuild b/app-backup/holland-backup-example/holland-backup-example-1.0.10.ebuild deleted file mode 100644 index 381e70da2771..000000000000 --- a/app-backup/holland-backup-example/holland-backup-example-1.0.10.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland Example Plugin" -HOMEPAGE="http://www.hollandbackup.org/" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND="" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" - -python_install_all() { - distutils-r1_python_install_all - - keepdir /etc/holland - keepdir /etc/holland/backupsets - keepdir /etc/holland/providers - - insinto /etc/holland/backupsets - doins "${S}"/../../config/backupsets/examples/${PN##*-}.conf - - insinto /etc/holland/providers - doins "${S}"/../../config/providers/${PN##*-}.conf -} diff --git a/app-backup/holland-backup-example/metadata.xml b/app-backup/holland-backup-example/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-backup-example/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland-backup-pgdump/Manifest b/app-backup/holland-backup-pgdump/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-backup-pgdump/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-backup-pgdump/holland-backup-pgdump-1.0.10.ebuild b/app-backup/holland-backup-pgdump/holland-backup-pgdump-1.0.10.ebuild deleted file mode 100644 index 63609d1a9966..000000000000 --- a/app-backup/holland-backup-pgdump/holland-backup-pgdump-1.0.10.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland pgdump Plugin" -HOMEPAGE="http://www.hollandbackup.org/" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND=" - ~app-backup/holland-lib-common-${PV}[${PYTHON_USEDEP}] - dev-python/psycopg[${PYTHON_USEDEP}] -" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" - -python_install_all() { - distutils-r1_python_install_all - - keepdir /etc/holland - keepdir /etc/holland/providers - - insinto /etc/holland/providers - doins "${S}"/../../config/providers/${PN##*-}.conf -} diff --git a/app-backup/holland-backup-pgdump/metadata.xml b/app-backup/holland-backup-pgdump/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-backup-pgdump/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland-backup-random/Manifest b/app-backup/holland-backup-random/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-backup-random/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-backup-random/holland-backup-random-1.0.10.ebuild b/app-backup/holland-backup-random/holland-backup-random-1.0.10.ebuild deleted file mode 100644 index c0c5500161e2..000000000000 --- a/app-backup/holland-backup-random/holland-backup-random-1.0.10.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland Random Plugin" -HOMEPAGE="http://www.hollandbackup.org/" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND="" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" - -python_install_all() { - distutils-r1_python_install_all - - keepdir /etc/holland - keepdir /etc/holland/backupsets - keepdir /etc/holland/providers - - insinto /etc/holland/backupsets - doins "${S}"/../../config/backupsets/examples/${PN##*-}.conf - - insinto /etc/holland/providers - doins "${S}"/../../config/providers/${PN##*-}.conf -} diff --git a/app-backup/holland-backup-random/metadata.xml b/app-backup/holland-backup-random/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-backup-random/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland-backup-sqlite/Manifest b/app-backup/holland-backup-sqlite/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-backup-sqlite/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-backup-sqlite/holland-backup-sqlite-1.0.10.ebuild b/app-backup/holland-backup-sqlite/holland-backup-sqlite-1.0.10.ebuild deleted file mode 100644 index cdb9d844719b..000000000000 --- a/app-backup/holland-backup-sqlite/holland-backup-sqlite-1.0.10.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland sqlite Plugin" -HOMEPAGE="http://www.hollandbackup.org/" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND="~app-backup/holland-lib-common-${PV}[${PYTHON_USEDEP}]" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" - -python_install_all() { - distutils-r1_python_install_all - - keepdir /etc/holland - keepdir /etc/holland/backupsets - keepdir /etc/holland/providers - - insinto /etc/holland/backupsets - doins "${S}"/../../config/backupsets/examples/${PN##*-}.conf - - insinto /etc/holland/providers - doins "${S}"/../../config/providers/${PN##*-}.conf -} diff --git a/app-backup/holland-backup-sqlite/metadata.xml b/app-backup/holland-backup-sqlite/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-backup-sqlite/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland-lib-common/Manifest b/app-backup/holland-lib-common/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-lib-common/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-lib-common/holland-lib-common-1.0.10.ebuild b/app-backup/holland-lib-common/holland-lib-common-1.0.10.ebuild deleted file mode 100644 index 0bcc8c88bfb8..000000000000 --- a/app-backup/holland-lib-common/holland-lib-common-1.0.10.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland Core Library" -HOMEPAGE="http://www.hollandbackup.org/" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND="" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" diff --git a/app-backup/holland-lib-common/metadata.xml b/app-backup/holland-lib-common/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-lib-common/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland-lib-lvm/Manifest b/app-backup/holland-lib-lvm/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland-lib-lvm/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland-lib-lvm/holland-lib-lvm-1.0.10.ebuild b/app-backup/holland-lib-lvm/holland-lib-lvm-1.0.10.ebuild deleted file mode 100644 index 311e601e857b..000000000000 --- a/app-backup/holland-lib-lvm/holland-lib-lvm-1.0.10.ebuild +++ /dev/null @@ -1,25 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland LVM Library" -HOMEPAGE="http://www.hollandbackup.org" - -MY_P="${P%%-*}-${P##*-}" - -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]" -RDEPEND="" -PDEPEND="~app-backup/holland-${PV}[${PYTHON_USEDEP}]" - -S="${WORKDIR}/${MY_P}/plugins/${PN//-/.}" diff --git a/app-backup/holland-lib-lvm/metadata.xml b/app-backup/holland-lib-lvm/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland-lib-lvm/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-backup/holland/Manifest b/app-backup/holland/Manifest deleted file mode 100644 index 38f16bd336ca..000000000000 --- a/app-backup/holland/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST holland-1.0.10.tar.gz 449334 BLAKE2B 0b0290b916448be1865ff2b5c2f0e78de9c4640418fc049b999f5dd171d8fa54c63411b5b8972c843d98f77e6b9726dbc849cb73d3771244e871bb9fea67652a SHA512 5183ec73012edcaba50ef5cc9b892480d5f60301d01d17bd96c5490bd8e6ae42bd21abb6084e6665317b8025489981a02293cd583964f01e86459609b93e918f diff --git a/app-backup/holland/holland-1.0.10.ebuild b/app-backup/holland/holland-1.0.10.ebuild deleted file mode 100644 index f7fadd3b2230..000000000000 --- a/app-backup/holland/holland-1.0.10.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Holland Core Plugins" -HOMEPAGE="http://www.hollandbackup.org/" -SRC_URI="http://hollandbackup.org/releases/stable/${PV%.*}/${P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="doc examples postgres sqlite" - -DEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - doc? ( dev-python/sphinx[${PYTHON_USEDEP}] ) -" -RDEPEND=" - postgres? ( ~app-backup/holland-backup-pgdump-${PV}[${PYTHON_USEDEP}] ) - sqlite? ( ~app-backup/holland-backup-sqlite-${PV}[${PYTHON_USEDEP}] ) - examples? ( - ~app-backup/holland-backup-example-${PV}[${PYTHON_USEDEP}] - ~app-backup/holland-backup-random-${PV}[${PYTHON_USEDEP}] - ) -" - -python_compile_all() { - use doc && emake -C docs html -} - -python_install_all() { - use doc && local DOCS=( README config/README config/providers/README docs/man/README docs/man/holland.rst ) - use doc && local HTML_DOCS=( docs/build/html/. ) - - distutils-r1_python_install_all - - keepdir /var/log/holland - - keepdir /etc/holland - keepdir /etc/holland/backupsets - keepdir /etc/holland/providers - - insinto /etc/holland - doins config/holland.conf - - insinto /etc/holland/backupsets - doins config/backupsets/default.conf - - doman docs/man/holland.1 -} diff --git a/app-backup/holland/metadata.xml b/app-backup/holland/metadata.xml deleted file mode 100644 index 7a38bb900964..000000000000 --- a/app-backup/holland/metadata.xml +++ /dev/null @@ -1,5 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> -</pkgmetadata> diff --git a/app-cdr/burn-cd/Manifest b/app-cdr/burn-cd/Manifest deleted file mode 100644 index e70f068030a6..000000000000 --- a/app-cdr/burn-cd/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST burn-cd-1.8.0.gz 14977 BLAKE2B 3cc72d908f86affd8c6fef1144ece00ea00ef4cf63858c5a3a01ff83640bd9b513feddf590c774538de6621611bfc842077ef60f28bde6db906aefd0eaa46ccb SHA512 d052d6bd909af3f3c96cee727e222e179d913aa42c2d2afe8104c57b5263b06f318d6ec870ad2862779d757c4d522b7d82892eb0725255261a28243c919b82cf -DIST burn-cd-1.8.1.tar.gz 153586 BLAKE2B 7762bfe7bb497752c0f78ddc2dba2a00423db2e3ef3dcd02ecb36a60eb6a4ecab69d04bc85971531443b8820cb8320e22349817540d95c694b9861261e6e821f SHA512 2da40c703351e97d164eeef7c5662cad66292b71a97f47ae4ddcbcf11a09fb298c6c9e8160da53b0908434e64048c2397beaa988b1cbc1513660f73d8f2fe1fe diff --git a/app-cdr/burn-cd/burn-cd-1.8.0-r1.ebuild b/app-cdr/burn-cd/burn-cd-1.8.0-r1.ebuild deleted file mode 100644 index 2a72ea5bedb0..000000000000 --- a/app-cdr/burn-cd/burn-cd-1.8.0-r1.ebuild +++ /dev/null @@ -1,31 +0,0 @@ -# Copyright 1999-2014 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-single-r1 - -DESCRIPTION="Smart console frontend for virtual/cdrtools and dvd+rw-tools" -HOMEPAGE="http://burn-cd.sourceforge.net" -SRC_URI="mirror://sourceforge/${PN}/${P}.gz" - -LICENSE="LGPL-2" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND="${PYTHON_DEPS} - virtual/cdrtools - app-cdr/dvd+rw-tools" -DEPEND="" - -REQUIRED_USE=${PYTHON_REQUIRED_USE} - -S=${WORKDIR} - -src_install() { - python_fix_shebang ${P} - newbin ${P} ${PN} -} diff --git a/app-cdr/burn-cd/burn-cd-1.8.1.ebuild b/app-cdr/burn-cd/burn-cd-1.8.1.ebuild deleted file mode 100644 index 9ae863226c5c..000000000000 --- a/app-cdr/burn-cd/burn-cd-1.8.1.ebuild +++ /dev/null @@ -1,27 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) -inherit python-r1 - -DESCRIPTION="Smart console frontend for the cdrkit/cdrtools & dvd+rw-tools" -HOMEPAGE="https://github.com/aglyzov/burn-cd/" -SRC_URI="https://github.com/aglyzov/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="LGPL-2" -SLOT="0" -KEYWORDS="amd64 x86" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS}" -RDEPEND="${DEPEND} - virtual/cdrtools - app-cdr/dvd+rw-tools" - -src_install() { - newbin ${P} ${PN} - insinto /etc - newins dotburn-cd.conf burn-cd.conf -} diff --git a/app-cdr/burn-cd/metadata.xml b/app-cdr/burn-cd/metadata.xml deleted file mode 100644 index fb5f12b99e68..000000000000 --- a/app-cdr/burn-cd/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>canutethegreat@gmail.com</email> - <name>Ronald Farrer</name> - </maintainer> - <maintainer type="project"> - <email>proxy-maint@gentoo.org</email> - <name>Proxy Maintainers</name> - </maintainer> - <upstream> - <remote-id type="github">aglyzov/burn-cd</remote-id> - <remote-id type="sourceforge">burn-cd</remote-id> - </upstream> -</pkgmetadata> diff --git a/app-dicts/opendict/Manifest b/app-dicts/opendict/Manifest deleted file mode 100644 index bb4193deaddd..000000000000 --- a/app-dicts/opendict/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST opendict-0.6.7.tar.gz 169580 BLAKE2B 665fe181bf16d8e923470568b6685149075b6c5a9afe2deffe6ee4ff792b4e6a2c166f3ce4297f59fc57cd11efe299a93518c4fb5e929b13270d04f172a62146 SHA512 ef97ec84591bda4d8d4746fa4532de109cf03d89dfd5aa20e1775224c687b503759c020b2286e5cedd395ebce5db3b2a10495adc31fcc31dbd4fddfca6fee1f8 diff --git a/app-dicts/opendict/metadata.xml b/app-dicts/opendict/metadata.xml deleted file mode 100644 index e41fb4b553e3..000000000000 --- a/app-dicts/opendict/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>wxwidgets@gentoo.org</email> - <name>Gentoo wxWidgets Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">opendict</remote-id> - </upstream> -</pkgmetadata> diff --git a/app-dicts/opendict/opendict-0.6.7-r1.ebuild b/app-dicts/opendict/opendict-0.6.7-r1.ebuild deleted file mode 100644 index 2adc18c71cf4..000000000000 --- a/app-dicts/opendict/opendict-0.6.7-r1.ebuild +++ /dev/null @@ -1,91 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -PYTHON_COMPAT=( python2_7 ) - -inherit gnome2 python-single-r1 readme.gentoo-r1 - -DESCRIPTION="OpenDict is a free cross-platform dictionary program" -HOMEPAGE="http://opendict.sourceforge.net/" -SRC_URI="mirror://sourceforge/opendict/files/${P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 ppc x86" - -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - $(python_gen_cond_dep ' - dev-python/wxpython:3.0[${PYTHON_MULTI_USEDEP}] - ') -" -DEPEND="${RDEPEND}" - -DISABLE_AUTOFORMATTING="yes" -DOC_CONTENTS="If you want system-wide plugins, unzip them into -${ROOT}usr/share/${PN}/dictionaries/plugins - -Some are available from http://opendict.sourceforge.net/?cid=3" - -src_prepare() { - sed -e "s:), '..')):), '../../../../..', 'share', 'opendict')):g" \ - -i "${S}/lib/info.py" - - gnome2_src_prepare -} - -src_configure() { - # override gnome2_src_configure - default -} - -src_compile() { - # evil makefile - : -} - -src_install() { - # makefile is broken, do it manually - - dodir /usr/share/${PN}/dictionaries/plugins # global dictionary plugins folder - - # Needed by GUI - insinto /usr/share/${PN} - doins "${S}"/copying.html - - insinto /usr/share/${PN}/pixmaps - doins "${S}"/pixmaps/* - - DHOME="$(python_get_sitedir)/opendict" - insinto "${DHOME}/lib" - doins -r "${S}"/lib/* - exeinto "${DHOME}" - python_fix_shebang opendict.py - doexe opendict.py - - dosym "${DHOME}/opendict.py" /usr/bin/opendict - - domenu misc/${PN}.desktop - - insinto /usr/share/icons/hicolor/24x24/apps/ - newins "${S}/pixmaps/icon-24x24.png" opendict.png - insinto /usr/share/icons/hicolor/32x32/apps/ - newins "${S}/pixmaps/icon-32x32.png" opendict.png - insinto /usr/share/icons/hicolor/48x48/apps/ - newins "${S}/pixmaps/icon-48x48.png" opendict.png - insinto /usr/share/icons/hicolor/scalable/apps/ - newins "${S}/pixmaps/SVG/icon-rune.svg" opendict.svg - - doman opendict.1 - dodoc README.txt TODO.txt doc/Plugin-HOWTO.html - - readme.gentoo_create_doc -} - -pkg_postinst() { - gnome2_pkg_postinst - readme.gentoo_print_elog -} diff --git a/app-editors/editra/Manifest b/app-editors/editra/Manifest deleted file mode 100644 index e4dbf0ec1afa..000000000000 --- a/app-editors/editra/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST Editra-0.7.20.tar.gz 4072243 BLAKE2B 3a2d38888ea9d7a12a77d4adb57b7e5c926757791e8b48eedd8413b6712cbfb2c616c3cf26f3f49c3a7ac5acf37d373cff8d37c63e255a1d0a9ec1add3dcbbe6 SHA512 e568ce2a5f04300c33223bf7a0e6fbc52d0a51c3472afb9b613fe21cfbeba0b9b453d87837e52c7c48050fc266ff5ff194a42f797053f21f0a25cd5c4579febe diff --git a/app-editors/editra/editra-0.7.20-r2.ebuild b/app-editors/editra/editra-0.7.20-r2.ebuild deleted file mode 100644 index 04cfc91b0dfe..000000000000 --- a/app-editors/editra/editra-0.7.20-r2.ebuild +++ /dev/null @@ -1,54 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -PYTHON_COMPAT=( python2_7 ) - -inherit eutils distutils-r1 fdo-mime - -MY_PN=${PN/e/E} - -DESCRIPTION="Multi-platform text editor supporting over 50 programming languages" -HOMEPAGE="http://editra.org https://pypi.org/project/Editra/" -SRC_URI="http://editra.org/uploads/src/${MY_PN}-${PV}.tar.gz" - -LICENSE="wxWinLL-3.1" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="spell" - -DEPEND=" - dev-python/wxpython:3.0[${PYTHON_USEDEP}] - >=dev-python/setuptools-0.6[${PYTHON_USEDEP}]" -# setuptools is RDEPEND because it's used by the runtime for installing plugins -RDEPEND="${DEPEND} - spell? ( dev-python/pyenchant[${PYTHON_USEDEP}] )" - -PATCHES=( "${FILESDIR}/${P}-wx30.patch" ) - -S="${WORKDIR}"/${MY_PN}-${PV} - -python_compile() { - # https://code.google.com/p/editra/issues/detail?id=481 - distutils-r1_python_compile --no-clean -} - -python_install() { - distutils-r1_python_install --no-clean -} - -python_install_all() { - distutils-r1_python_install_all - - doicon "${S}"/pixmaps/editra.png - make_desktop_entry editra Editra editra "Utility;TextEditor" - dodoc FAQ THANKS -} - -pkg_postinst() { - fdo-mime_desktop_database_update -} - -pkg_postrm() { - fdo-mime_desktop_database_update -} diff --git a/app-editors/editra/files/editra-0.7.20-wx30.patch b/app-editors/editra/files/editra-0.7.20-wx30.patch deleted file mode 100644 index e5e7b7f918d6..000000000000 --- a/app-editors/editra/files/editra-0.7.20-wx30.patch +++ /dev/null @@ -1,44 +0,0 @@ -Description: Updates for better wxPython 3.0 compatibility -Author: Olly Betts <olly@survex.com> -Bug-Debian: https://bugs.debian.org/758947 -Forwarded: no -Last-Update: 2014-08-30 - ---- editra-0.7.20+dfsg.1.orig/src/ed_main.py -+++ editra-0.7.20+dfsg.1/src/ed_main.py -@@ -432,7 +432,7 @@ class MainWindow(wx.Frame, viewmgr.Persp - - dlg = wx.FileDialog(self, _("Editra: Open"), fdir, "", - ''.join(syntax.GenFileFilters()), -- wx.OPEN | wx.MULTIPLE | wx.CHANGE_DIR) -+ wx.FD_OPEN | wx.FD_MULTIPLE | wx.FD_CHANGE_DIR) - dlg.SetFilterIndex(_PGET('FFILTER', 'int', 0)) - - if ebmlib.LockCall(self._mlock, dlg.ShowModal) == wx.ID_OK: -@@ -680,7 +680,7 @@ class MainWindow(wx.Frame, viewmgr.Persp - os.path.dirname(sdir), - title.lstrip(u"*"), - u''.join(syntax.GenFileFilters()), -- wx.SAVE | wx.OVERWRITE_PROMPT) -+ wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT) - - if ebmlib.LockCall(self._mlock, dlg.ShowModal) == wx.ID_OK: - path = dlg.GetPath() -@@ -713,7 +713,7 @@ class MainWindow(wx.Frame, viewmgr.Persp - dlg = wx.FileDialog(self, _("Where to Save Profile?"), \ - CONFIG['PROFILE_DIR'], "default.ppb", \ - _("Profile") + " (*.ppb)|*.ppb", -- wx.SAVE | wx.OVERWRITE_PROMPT) -+ wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT) - - if ebmlib.LockCall(self._mlock, dlg.ShowModal) == wx.ID_OK: - profiler.TheProfile.Write(dlg.GetPath()) -@@ -732,7 +732,7 @@ class MainWindow(wx.Frame, viewmgr.Persp - if evt.Id == ID_LOAD_PROFILE: - dlg = wx.FileDialog(self, _("Load a Custom Profile"), - CONFIG['PROFILE_DIR'], "default.ppb", -- _("Profile") + " (*.ppb)|*.ppb", wx.OPEN) -+ _("Profile") + " (*.ppb)|*.ppb", wx.FD_OPEN) - - if ebmlib.LockCall(self._mlock, dlg.ShowModal) == wx.ID_OK: - profiler.TheProfile.Load(dlg.GetPath()) diff --git a/app-editors/editra/metadata.xml b/app-editors/editra/metadata.xml deleted file mode 100644 index 0c7ee856e108..000000000000 --- a/app-editors/editra/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>wxwidgets@gentoo.org</email> - <name>Gentoo wxWidgets Project</name> - </maintainer> -</pkgmetadata> diff --git a/app-editors/leo/Manifest b/app-editors/leo/Manifest deleted file mode 100644 index db9ba9583b85..000000000000 --- a/app-editors/leo/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST leo-5.6.tar.gz 9255687 BLAKE2B 46a9aa1d90a1663ece57731b3685def3bf050f2c398310aca9d24c07256d23e40a94e505c43bd90c6c5a58fda2021409d3e6510eddd5a1bc0533273c45495475 SHA512 c9f6583be4f6a76d781adccc4076782c6f136b1057796228a398cd31c92d61e1b7a86d151f36352c6b1f677bb3d298b6f347c9874e3782c645fdb6ee38747955 diff --git a/app-editors/leo/leo-5.6.ebuild b/app-editors/leo/leo-5.6.ebuild deleted file mode 100644 index 2ee3cdc76dc0..000000000000 --- a/app-editors/leo/leo-5.6.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -MY_P="${PN}-editor-${PV}" -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQUIRED_USE="tk" -inherit distutils-r1 - -DESCRIPTION="Leo: Literate Editor with Outlines" -HOMEPAGE="https://github.com/leo-editor/leo-editor/" -SRC_URI="https://github.com/leo-editor/leo-editor/archive/${PV}.tar.gz -> ${P}.tar.gz" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="doc" - -RDEPEND=" - app-text/silvercity[${PYTHON_USEDEP}] - dev-python/PyQt5[${PYTHON_USEDEP}] -" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${MY_P}" - -python_prepare_all() { - distutils-r1_python_prepare_all - cp leo/dist/setup.py leo/dist/leo-install.py . || die -} - -python_install_all() { - use doc && local HTML_DOCS=( leo/doc/html/. ) - distutils-r1_python_install_all -} diff --git a/app-editors/leo/metadata.xml b/app-editors/leo/metadata.xml deleted file mode 100644 index 4e9fe29019ce..000000000000 --- a/app-editors/leo/metadata.xml +++ /dev/null @@ -1,9 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> - <upstream> - <remote-id type="github">leo-editor/leo-editor</remote-id> - <remote-id type="sourceforge">leo</remote-id> - </upstream> -</pkgmetadata> diff --git a/app-emulation/playonlinux/Manifest b/app-emulation/playonlinux/Manifest deleted file mode 100644 index 8c67aafdf402..000000000000 --- a/app-emulation/playonlinux/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST PlayOnLinux_4.2.12.tar.gz 3204230 BLAKE2B 80ef0e5763448da4a37263c64d408e8263771694666a7c704b5900dfe0e52cc18405c34d609d8c49a0d05a383fca2d035e956e3bbe9a9a0c92a4e43b319ed7ba SHA512 f4ededc8fe0117c66fd5672e136e19b9b48a41acdd3e1b1b3dd7fae2c354e77795f0a4f8286b09b7d1813363aee50fa0811c04c3194aaf745963a2e6115b3909 -DIST PlayOnLinux_4.3.4.tar.gz 3101890 BLAKE2B d724cbd90a0f1bbc94c6365fcf6511d39ea0e8e9de32f42716111324f69091874ab19d3fa88a6bd9f77ed6308bc03ca708406fdc24faa60bf662e6a4f5d15d86 SHA512 7f2089d37379adee01424777e9c3b7ec16dd56ba2f4b834b4f0447832c050b2df3218a7361e8e735d5cc359aec6a000fea88e11632c9434232e4f749bb21c173 diff --git a/app-emulation/playonlinux/files/playonlinux-4.2.4-binary-plugin.patch b/app-emulation/playonlinux/files/playonlinux-4.2.4-binary-plugin.patch deleted file mode 100644 index d5d3727e9fb0..000000000000 --- a/app-emulation/playonlinux/files/playonlinux-4.2.4-binary-plugin.patch +++ /dev/null @@ -1,17 +0,0 @@ -Description: Remove binary code from the package - Upstream ships a binary plugin in the archive. This plugin is not necessary to - get PlayOnLinux working and it still can be downloaded from upstream. -Forwarded: not-needed -Author: Bertrand Marc <beberking@gmail.com> ---- a/plugins/plugins.lst -+++ b/plugins/plugins.lst -@@ -21,9 +21,6 @@ - - ## in fact empty line is also ignored because it's more easy to read =) - --##Capture --capture;Capture_2.4.3.pol;Capture;enable;2.4.3;11;1;0 -- - ##Screencap - screencap;ScreenCap_0.0.4.pol;ScreenCap;enable;0.0.4;1;1;1 - diff --git a/app-emulation/playonlinux/files/playonlinux-4.2.4-pol-bash.patch b/app-emulation/playonlinux/files/playonlinux-4.2.4-pol-bash.patch deleted file mode 100644 index f9b3e2b81c29..000000000000 --- a/app-emulation/playonlinux/files/playonlinux-4.2.4-pol-bash.patch +++ /dev/null @@ -1,35 +0,0 @@ -diff --git a/etc/pol_bash b/etc/pol_bash -index 7911f05..bd891e4 100644 ---- a/etc/pol_bash -+++ b/etc/pol_bash -@@ -29,7 +29,15 @@ export HISTCONTROL=ignoreboth - shopt -s checkwinsize - - # make less more friendly for non-text input files, see lesspipe(1) --[ -x /usr/bin/lesspipe ] && eval "$(lesspipe)" -+less_pipe_cmd=$(lesspipe 2> /dev/null) -+if [ "$less_pipe_cmd" == export* ]; then -+ eval "$(lesspipe)" -+else -+ if [ -x /usr/bin/lesspipe ]; then -+ export LESSOPEN='| lesspipe %s' -+ fi -+fi -+unset less_pipe_cmd - - # set variable identifying the chroot you work in (used in the prompt below) - if [ -z "$debian_chroot" ] && [ -r /etc/debian_chroot ]; then -@@ -73,7 +81,9 @@ fi - # enable programmable completion features (you don't need to enable - # this, if it's already enabled in /etc/bash.bashrc and /etc/profile - # sources /etc/bash.bashrc). --if [ -f /etc/bash_completion ]; then -- . /etc/bash_completion --fi -- -+for bashcomp in /etc/{bash_completion,profile.d/bash-completion.sh}; do -+ if [ -r "$bashcomp" ]; then -+ . "$bashcomp" -+ fi -+done -+unset bashcomp diff --git a/app-emulation/playonlinux/files/playonlinux-4.2.6-stop-update-warning.patch b/app-emulation/playonlinux/files/playonlinux-4.2.6-stop-update-warning.patch deleted file mode 100644 index f5cf055f84bc..000000000000 --- a/app-emulation/playonlinux/files/playonlinux-4.2.6-stop-update-warning.patch +++ /dev/null @@ -1,17 +0,0 @@ -# This patch enables the $DEBIAN_PACKAGE variable for playonlinux. -# The changes are described in the source comments below. -# The flag is unfortnuately named debian, however the -# benefits apply to any package management system. -# Patch written by Adam Mills <adam@armills.info> - ---- a/python/lib/Variables.py 2013-08-10 22:19:46.053365072 -0400 -+++ b/python/lib/Variables-patched.py 2013-08-10 22:17:58.275881842 -0400 -@@ -26,7 +26,7 @@ - # Debian packagers should switch this to TRUE - # It will disable update alerts, bug reports, statistics - # It will set the good locale directory, and it will use the good msttcorefonts --os.environ["DEBIAN_PACKAGE"] = "FALSE" -+os.environ["DEBIAN_PACKAGE"] = "TRUE" - - # Variables PlayOnMac - if (os.environ["POL_OS"] == "Mac"): diff --git a/app-emulation/playonlinux/files/playonlinux-pkg.1 b/app-emulation/playonlinux/files/playonlinux-pkg.1 deleted file mode 100644 index b96a8dc921da..000000000000 --- a/app-emulation/playonlinux/files/playonlinux-pkg.1 +++ /dev/null @@ -1,33 +0,0 @@ -.TH PLAYONLINUX-PKG 1 "February 6, 2009" - -.SH NAME -playonlinux-pkg \- tool to manage playonlinux packages - -.SH SYNOPSIS -.B playonlinux-pkg -.RI [ options ] -.RI [ package ] - -.SH DESCRIPTION -.B playonlinux-pkg -is a tool to install or manage the playonlinux packages - -.SH OPTIONS -.TP -.I "-b, --browse" - Choose a file. -.TP -.I "-e, --extract" - Extract the package. -.TP -.I "-i, --install" - Install the package. -.TP -.I "-h, --help" - Show usage. - -.SH AUTHOR -playonlinux was written by Quentin Pâris <qparis@playonlinux.com>. -.PP -This manual page was written by Bertrand Marc <beberking@gmail.com>, -for the Debian project (but may be used by others). diff --git a/app-emulation/playonlinux/files/playonlinux.1 b/app-emulation/playonlinux/files/playonlinux.1 deleted file mode 100644 index 63c499be7327..000000000000 --- a/app-emulation/playonlinux/files/playonlinux.1 +++ /dev/null @@ -1,33 +0,0 @@ -.TH PLAYONLINUX 1 "February 6, 2009" - -.SH NAME -PlayOnLinux \- front-end for Wine - -.SH SYNOPSIS -.B playonlinux -.RI [ options ] - -.SH DESCRIPTION -.B PlayOnLinux -is a front-end for Wine. It allows you to easily install and use numerous games and software designed to run with Microsoft®'s Windows®. -.br -Few games are compatible with GNU/Linux at the moment and it certainly is a factor preventing the migration to this system. -.P -.B PlayOnLinux -performs installations in -.I ~/.PlayOnLinux -and uses separate Wine prefixes to avoid conflicts between applications. - -.SH OPTIONS -.TP -.I --version - Show version number and exit. -.TP -.I "--run <prog>" - Run directly the specified program. - -.SH AUTHOR -playonlinux was written by Quentin Pâris <qparis@playonlinux.com>. -.PP -This manual page was written by Bertrand Marc <beberking@gmail.com>, -for the Debian project (but may be used by others). diff --git a/app-emulation/playonlinux/metadata.xml b/app-emulation/playonlinux/metadata.xml deleted file mode 100644 index b43e3dddd0c0..000000000000 --- a/app-emulation/playonlinux/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>NP-Hardass@gentoo.org</email> - <name>NP-Hardass</name> - </maintainer> - <maintainer type="project"> - <email>wine@gentoo.org</email> - <name>Wine</name> - </maintainer> - <use> - <flag name="winbind">Enables support for the winbind auth daemon</flag> - </use> -</pkgmetadata> diff --git a/app-emulation/playonlinux/playonlinux-4.2.12.ebuild b/app-emulation/playonlinux/playonlinux-4.2.12.ebuild deleted file mode 100644 index a7b49cb2190b..000000000000 --- a/app-emulation/playonlinux/playonlinux-4.2.12.ebuild +++ /dev/null @@ -1,118 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI="6" -PYTHON_COMPAT=( python2_7 ) - -inherit eutils gnome2-utils python-single-r1 - -MY_PN="PlayOnLinux" - -DESCRIPTION="Set of scripts to easily install and use Windows games and software" -HOMEPAGE="https://playonlinux.com/" -SRC_URI="http://www.playonlinux.com/script_files/${MY_PN}/${PV}/${MY_PN}_${PV}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="winbind" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="" -RDEPEND="${PYTHON_DEPS} - app-arch/cabextract - app-arch/p7zip - app-arch/unzip - app-crypt/gnupg - virtual/wine - $(python_gen_cond_dep ' - dev-python/wxpython:3.0[${PYTHON_MULTI_USEDEP}] - ') - net-misc/wget - x11-apps/mesa-progs - x11-terms/xterm - media-gfx/icoutils - net-analyzer/netcat - virtual/imagemagick-tools - winbind? ( net-fs/samba[winbind] ) -" - -S="${WORKDIR}/${PN}" - -# TODO: -# Having a real install script -# It will let using LANGUAGES easily -# How to deal with Microsoft Fonts installation asked every time ? -# How to deal with wine version installed ? (have a better mgmt of system one) -# Look at debian pkg: https://packages.debian.org/sid/playonlinux - -PATCHES=( - "${FILESDIR}/${PN}-4.2.4-pol-bash.patch" - "${FILESDIR}/${PN}-4.2.4-binary-plugin.patch" - "${FILESDIR}/${PN}-4.2.6-stop-update-warning.patch" -) - -src_prepare() { - default - - python_fix_shebang . - - # remove playonmac - rm etc/{playonmac.icns,terminal.applescript} || die - - # remove desktop integration - rm etc/{PlayOnLinux.desktop,PlayOnLinux.directory,playonlinux-Programs.menu} || die -} - -src_install() { - # all things without exec permissions - insinto "/usr/share/${PN}" - doins -r resources lang lib etc plugins - - # bash/ install - exeinto "/usr/share/${PN}/bash" - find "${S}/bash" -type f -exec doexe '{}' + - exeinto "/usr/share/${PN}/bash/expert" - find "${S}/bash/expert" -type f -exec doexe '{}' + - - # python/ install - python_moduleinto "/usr/share/${PN}" - python_domodule python - - # main executable files - exeinto "/usr/share/${PN}" - doexe ${PN}{,-pkg,-bash,-shell,-url_handler} - - # icons - doicon -s 128 etc/${PN}.png - for size in 16 22 32; do - newicon -s $size etc/${PN}$size.png ${PN}.png - done - - doman "${FILESDIR}"/playonlinux{,-pkg}.1 - dodoc CHANGELOG.md - - make_wrapper ${PN} "./${PN}" "/usr/share/${PN}" - make_wrapper ${PN}-pkg "./${PN}-pkg" "/usr/share/${PN}" - make_desktop_entry ${PN} ${MY_PN} ${PN} Game -} - -pkg_preinst() { - gnome2_icon_savelist -} - -pkg_postinst() { - gnome2_icon_cache_update -} - -pkg_prerm() { - if [[ -z ${REPLACING_VERSIONS} ]]; then - elog "Installed software and games with playonlinux have not been removed." - elog "To remove them, you can re-install playonlinux and remove them using it," - elog "or do it manually by removing .PlayOnLinux/ in your home directory." - fi -} - -pkg_postrm() { - gnome2_icon_cache_update -} diff --git a/app-emulation/playonlinux/playonlinux-4.3.4-r1.ebuild b/app-emulation/playonlinux/playonlinux-4.3.4-r1.ebuild deleted file mode 100644 index a1e610f9b4f0..000000000000 --- a/app-emulation/playonlinux/playonlinux-4.3.4-r1.ebuild +++ /dev/null @@ -1,108 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -PYTHON_COMPAT=( python2_7 ) - -inherit desktop eutils python-single-r1 xdg - -MY_PN="PlayOnLinux" - -DESCRIPTION="Set of scripts to easily install and use Windows games and software" -HOMEPAGE="https://playonlinux.com/" -SRC_URI="https://www.playonlinux.com/script_files/${MY_PN}/${PV}/${MY_PN}_${PV}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="winbind" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="" -RDEPEND="${PYTHON_DEPS} - app-arch/cabextract - app-arch/p7zip - app-arch/unzip - app-crypt/gnupg - app-misc/jq - $(python_gen_cond_dep ' - dev-python/wxpython:3.0[${PYTHON_MULTI_USEDEP}] - ') - media-gfx/icoutils - || ( net-analyzer/netcat net-analyzer/openbsd-netcat ) - net-misc/wget - virtual/imagemagick-tools - virtual/wine - winbind? ( net-fs/samba[winbind] ) - x11-apps/mesa-progs - x11-terms/xterm -" - -S="${WORKDIR}/${PN}" - -# TODO: -# Having a real install script -# It will let using LANGUAGES easily -# How to deal with Microsoft Fonts installation asked every time ? -# How to deal with wine version installed ? (have a better mgmt of system one) -# Look at debian pkg: https://packages.debian.org/sid/playonlinux - -PATCHES=( - "${FILESDIR}/${PN}-4.2.4-pol-bash.patch" - "${FILESDIR}/${PN}-4.2.4-binary-plugin.patch" - "${FILESDIR}/${PN}-4.2.6-stop-update-warning.patch" -) - -src_prepare() { - default - - python_fix_shebang . - - # remove playonmac - rm etc/{playonmac.icns,terminal.applescript} || die - - # remove desktop integration - rm etc/{PlayOnLinux.desktop,PlayOnLinux.directory,playonlinux-Programs.menu} || die -} - -src_install() { - # all things without exec permissions - insinto "/usr/share/${PN}" - doins -r resources lang lib etc plugins - - # bash/ install - exeinto "/usr/share/${PN}/bash" - find "${S}/bash" -type f -exec doexe '{}' + - exeinto "/usr/share/${PN}/bash/expert" - find "${S}/bash/expert" -type f -exec doexe '{}' + - - # python/ install - python_moduleinto "/usr/share/${PN}" - python_domodule python - - # main executable files - exeinto "/usr/share/${PN}" - doexe ${PN}{,-pkg,-bash,-shell,-url_handler} - - # icons - doicon -s 128 etc/${PN}.png - for size in 16 22 32; do - newicon -s $size etc/${PN}$size.png ${PN}.png - done - - doman "${FILESDIR}"/playonlinux{,-pkg}.1 - dodoc CHANGELOG.md - - make_wrapper ${PN} "./${PN}" "/usr/share/${PN}" - make_wrapper ${PN}-pkg "./${PN}-pkg" "/usr/share/${PN}" - make_desktop_entry ${PN} ${MY_PN} ${PN} Game -} - -pkg_prerm() { - if [[ -z ${REPLACING_VERSIONS} ]]; then - elog "Installed software and games with playonlinux have not been removed." - elog "To remove them, you can re-install playonlinux and remove them using it," - elog "or do it manually by removing .PlayOnLinux/ in your home directory." - fi -} diff --git a/app-office/taskcoach/Manifest b/app-office/taskcoach/Manifest deleted file mode 100644 index df8ef9b5d8d8..000000000000 --- a/app-office/taskcoach/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST TaskCoach-1.4.6.tar.gz 2927090 BLAKE2B 24f7b2f293d34d8ef0084c7065fdf5de6b01f437c971ad0d504125793ec71581ccedbd6db0701653db409ce04fb99b55f995037510daa58f10e2b15b439dc64b SHA512 f393f9e7d8422e1453a1bd711d08ba6bdcccd5634095262475538dfbd1fb7a943798b6ff197e38367cf8e6162e25fef50178458f73b76f483495d61545bec8fe diff --git a/app-office/taskcoach/files/taskcoach-1.4.3-version-check.patch b/app-office/taskcoach/files/taskcoach-1.4.3-version-check.patch deleted file mode 100644 index f869c9930b25..000000000000 --- a/app-office/taskcoach/files/taskcoach-1.4.3-version-check.patch +++ /dev/null @@ -1,25 +0,0 @@ -From 8967c58a435ad8c1db5599edd044de2902399459 Mon Sep 17 00:00:00 2001 -From: Sebastian Pipping <sebastian@pipping.org> -Date: Fri, 24 Jun 2016 15:54:24 +0200 -Subject: [PATCH] Disable check for new version by default - ---- - taskcoachlib/config/defaults.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/taskcoachlib/config/defaults.py b/taskcoachlib/config/defaults.py -index 77a3809..5025af3 100644 ---- a/taskcoachlib/config/defaults.py -+++ b/taskcoachlib/config/defaults.py -@@ -538,7 +538,7 @@ defaults = { - 'pythonfrozen': '', # Idem - 'current': meta.data.version, - 'notified': meta.data.version, -- 'notify': 'True' -+ 'notify': 'False' - }, - 'behavior': { - 'markparentcompletedwhenallchildrencompleted': 'False', --- -2.9.0 - diff --git a/app-office/taskcoach/metadata.xml b/app-office/taskcoach/metadata.xml deleted file mode 100644 index c3028aa25110..000000000000 --- a/app-office/taskcoach/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>bugs@chead.ca</email> - <name>Christopher Head</name> - </maintainer> - <maintainer type="project"> - <email>proxy-maint@gentoo.org</email> - <name>Proxy Maintainers</name> - </maintainer> - <longdescription> - Task Coach is an open source todo manager to manage personal tasks and - todo lists. It supports composite tasks, i.e. tasks within tasks. In - addition, Task Coach allows you to categorize your tasks, track efforts - against a budget per task, and much more. - </longdescription> - <upstream> - <remote-id type="sourceforge">taskcoach</remote-id> - </upstream> -</pkgmetadata> diff --git a/app-office/taskcoach/taskcoach-1.4.6.ebuild b/app-office/taskcoach/taskcoach-1.4.6.ebuild deleted file mode 100644 index 25f50aec9ceb..000000000000 --- a/app-office/taskcoach/taskcoach-1.4.6.ebuild +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 -PYTHON_COMPAT=( python2_7 ) - -inherit desktop distutils-r1 - -MY_PN="TaskCoach" -MY_P="${MY_PN}-${PV}" - -DESCRIPTION="Simple personal tasks and todo lists manager" -HOMEPAGE="https://www.taskcoach.org https://pypi.org/project/TaskCoach/" -SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz" -LICENSE="GPL-3+" - -SLOT="0" -KEYWORDS="amd64 x86" - -# Task Coach can also optionally use igraph to draw task dependency graphs -# since 1.4.4, but that is not packaged in Gentoo at this time. - -DEPEND=" - dev-python/wxpython:3.0[${PYTHON_USEDEP}] - >=dev-python/twisted-16.0.0[${PYTHON_USEDEP}] -" -RDEPEND="${DEPEND} - x11-libs/libXScrnSaver -" - -S="${WORKDIR}/${MY_P}" - -DOCS=( CHANGES.txt README.txt ) -PATCHES=( "${FILESDIR}/${PN}-1.4.3-version-check.patch" ) - -python_install_all() { - distutils-r1_python_install_all - - doicon "icons.in/${PN}.png" - make_desktop_entry ${PN}.py "Task Coach" ${PN} Office -} diff --git a/app-text/bibus/Manifest b/app-text/bibus/Manifest deleted file mode 100644 index 02ee377e791e..000000000000 --- a/app-text/bibus/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST bibus-1.5.2-lo-4.patch.xz 13196 BLAKE2B 1dfef94699eee77537fea3d3b93aeb1613fc93b68df1deb43c4af6fae0bf5aeb2282bb823f4824272acdef53a5edcd9b30a52415e82da00952971fa65ec0d9dc SHA512 68b90574e9dd0bb3e2cc89c539ff35febdf4ac37dfb65c06709d21b62fdda0108c93f05d37ab96bf52c4f99bbe20caa361d562c297b05dc7ea37404eea659fd1 -DIST bibus_1.5.2.orig.tar.gz 5411889 BLAKE2B db95ea4b1e0ba22fd85cb36d945864741a2f40890499018698c679c9f7d4b77b2299d2aa941664b2e4011c41ea62a31463b39c392eb3678633de17482f928474 SHA512 33d091dacc707859a11010fcba57691a3e2726ae7579d601720b4398f7be29b580be978da8cd058fab491ec5b52dd3ce33c964a8d5077f8e80d8f0f387ffa2c4 diff --git a/app-text/bibus/bibus-1.5.2-r3.ebuild b/app-text/bibus/bibus-1.5.2-r3.ebuild deleted file mode 100644 index f046112d4e06..000000000000 --- a/app-text/bibus/bibus-1.5.2-r3.ebuild +++ /dev/null @@ -1,86 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="sqlite" - -inherit python-r1 versionator xdg-utils - -DESCRIPTION="Bibliographic and reference management software, integrates with LO and MS Word" -HOMEPAGE="http://bibus-biblio.sourceforge.net/" -SRC_URI=" - mirror://sourceforge/${PN}-biblio/${PN}_${PV}.orig.tar.gz - https://dev.gentoo.org/~jlec/distfiles/${P}-lo-4.patch.xz - " - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 x86" - -IUSE="mysql" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -# Most of this mess is designed to give the choice of sqlite or mysql -# but prefer sqlite. We also need to default to sqlite if neither is requested. -# Cannot depend on virtual/ooo -# bibus fails to start with app-office/openoffice-bin (bug #288232). -RDEPEND=" - ${PYTHON_DEPS} - app-office/libreoffice - dev-python/wxpython:3.0[${PYTHON_USEDEP}] - dev-db/sqliteodbc - dev-db/unixODBC - mysql? ( - dev-python/mysql-python[${PYTHON_USEDEP}] - dev-db/myodbc - ) -" -DEPEND="${RDEPEND}" - -PATCHES=( - "${FILESDIR}"/${P}-install.patch - "${FILESDIR}"/${P}-bibus.cfg.patch - "${WORKDIR}"/${P}-lo-4.patch - "${FILESDIR}"/${P}-wx30.patch -) - -pkg_setup() { - if [[ -d "/usr/$(get_libdir)/openoffice" ]] ; then - OFFICESUITE="/usr/$(get_libdir)/openoffice" - else - OFFICESUITE="/usr/$(get_libdir)/libreoffice" - fi -} - -src_compile() { :; } - -src_install() { - einfo "Installing for ${OFFICESUITE}" - installation() { - emake \ - DESTDIR="${D}" \ - prefix="${EPREFIX}/usr" \ - oopath="${OFFICESUITE}/program" \ - ooure="${OFFICESUITE}/ure-link/lib" \ - oobasis="${OFFICESUITE}/program" \ - sysconfdir="${EPREFIX}/etc" \ - pythondir="$(python_get_sitedir)" \ - python=${PYTHON} \ - install install-doc-en - } - python_foreach_impl installation - python_foreach_impl python_optimize - - python_foreach_impl python_newscript bibusStart.py ${PN} -} - -pkg_postinst() { - xdg_desktop_database_update - xdg_mimeinfo_database_update -} - -pkg_postrm() { - xdg_desktop_database_update - xdg_mimeinfo_database_update -} diff --git a/app-text/bibus/files/bibus-1.5.2-bibus.cfg.patch b/app-text/bibus/files/bibus-1.5.2-bibus.cfg.patch deleted file mode 100644 index bfba0c0ac43b..000000000000 --- a/app-text/bibus/files/bibus-1.5.2-bibus.cfg.patch +++ /dev/null @@ -1,31 +0,0 @@ - bibusStart.py | 8 +++++--- - 1 file changed, 5 insertions(+), 3 deletions(-) - -diff --git a/bibusStart.py b/bibusStart.py -index edfc19f..99c5381 100644 ---- a/bibusStart.py -+++ b/bibusStart.py -@@ -17,12 +17,14 @@ - # along with Bibus; if not, write to the Free Software - # Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA. - # --import ConfigParser,os,sys,urllib,urlparse -+import ConfigParser,os,sys,urllib,urlparse,site - cp=ConfigParser.ConfigParser() - fileName = sys.argv[0] - while os.path.islink(fileName): fileName = os.readlink(fileName) - sourcedir = os.path.abspath( os.path.dirname(fileName) ) --cp.read( os.path.join(sourcedir,'bibus.cfg') ) -+bibus_sitedir = os.path.join(site.getsitepackages()[0], 'bibus') -+bibus_cfg = os.path.join(bibus_sitedir, 'bibus.cfg') -+cp.read(bibus_cfg) - # We read first, then if it is not null we convert to absolute path - # otherwise, empty path will be converted to the current directory path - python = cp.get('PATH','python') -@@ -69,5 +71,5 @@ else: - except KeyError: - os.environ[LIBPATH] = oopath - # starting Bibus --os.execl( python , os.path.basename(python) , QUOTE+ os.path.join(sourcedir,'bibus.py') +QUOTE ) -+os.execl( python , os.path.basename(python) , QUOTE+ os.path.join(bibus_sitedir,'bibus.py') +QUOTE ) - diff --git a/app-text/bibus/files/bibus-1.5.2-install.patch b/app-text/bibus/files/bibus-1.5.2-install.patch deleted file mode 100644 index 5225fcd6c3d8..000000000000 --- a/app-text/bibus/files/bibus-1.5.2-install.patch +++ /dev/null @@ -1,110 +0,0 @@ - Makefile | 62 ++++++++++++++++++++++++-------------------------------------- - 1 files changed, 24 insertions(+), 38 deletions(-) - -diff --git a/Makefile b/Makefile -index d41b12d..b07cdff 100755 ---- a/Makefile -+++ b/Makefile -@@ -14,62 +14,60 @@ mandir = $(prefix)/share/man - man1dir = $(mandir)/man1 - - define install-files -- install -d $(datadir)/bibus -- install -m644 *.py MySQL_Bibus.ini $(datadir)/bibus/ -+ install -d $(DESTDIR)$(pythondir)/bibus -+ install -m644 *.py MySQL_Bibus.ini $(DESTDIR)/$(pythondir)/bibus/ - # - for dir in Export Format Import StyleEditor FirstStart bibOOo db_models Pixmaps Data LyX Utilities; do \ -- find $$dir ! -wholename '*CVS*' -a -type f -exec install -m644 '{}' -D $(datadir)/bibus/'{}' ';' ; \ -+ find $$dir ! -wholename '*CVS*' -a -type f -exec install -m644 '{}' -D $(DESTDIR)/$(pythondir)/bibus/'{}' ';' ; \ - done -- install -m644 Setup/UnoConnectionListener.odg -D $(datadir)/bibus/Setup/UnoConnectionListener.odg -+ install -m644 Setup/UnoConnectionListener.odg -D $(DESTDIR)/$(datadir)/bibus/Setup/UnoConnectionListener.odg - # locale files. We look for all the directory in locale/ - for dir in $(wildcard locale/*); do \ - if [ -d $$dir ] && [ $$dir != "locale/CVS" ]; then \ -- install -m644 $$dir/LC_MESSAGES/bibus.mo -D $(datadir)/$$dir/LC_MESSAGES/bibus.mo ; \ -+ install -m644 $$dir/LC_MESSAGES/bibus.mo -D $(DESTDIR)/$(datadir)/$$dir/LC_MESSAGES/bibus.mo ; \ - fi; \ - done - # bibus.config in /etc -- install -m644 bibus.config -D $(sysconfdir)/bibus.config -+ install -m644 bibus.config -D $(DESTDIR)/$(sysconfdir)/bibus.config - # man page -- install -m644 Setup/bibus.1 -D $(man1dir)/bibus.1 -+ install -m644 Setup/bibus.1 -D $(DESTDIR)/$(man1dir)/bibus.1 - - # freedesktop icon and shortcut -- install -m644 Pixmaps/bibus.png -D $(datadir)/icons/hicolor/48x48/apps/bibus.png -- install -m644 Setup/bibus.desktop -D $(datadir)/applications/bibus.desktop -+ install -m644 Pixmaps/bibus.png -D $(DESTDIR)$(datadir)/pixmaps/bibus.png -+ install -m644 Setup/bibus.desktop -D $(DESTDIR)/$(datadir)/applications/bibus.desktop - # The following lines are presumably not needed since icons/desktop are in standard locations - #echo 'Exec=$(bindir)/bibus' >> $(datadir)/applications/bibus.desktop - #echo 'Icon=$(datadir)/icons/hicolor/48x48/apps/bibus.png' >> $(datadir)/applications/bibus.desktop - - # bibus command -- install -d $(bindir) -- ln -sf $(datadir)/bibus/bibusStart.py $(bindir)/bibus -- chmod 755 $(datadir)/bibus/bibusStart.py -+ install -d $(DESTDIR)/$(bindir) -+ ln -sf $(pythondir)/bibus/bibusStart.py $(DESTDIR)/$(bindir)/bibus -+ chmod 755 $(DESTDIR)$(pythondir)/bibus/bibusStart.py - - # basic doc files -- install -m755 -d $(datadir)/doc/bibus -- install -m644 Docs/*.txt Docs/CHANGELOG Docs/copying $(datadir)/doc/bibus -+ install -m755 -d $(DESTDIR)/$(datadir)/doc/${PF} -+ install -m644 Docs/*.txt Docs/CHANGELOG Docs/copying $(DESTDIR)/$(datadir)/doc/${PF} - - # generating bibus.cfg file -- echo '[PATH]' > $(datadir)/bibus/bibus.cfg -- echo 'python = $(python)' >> $(datadir)/bibus/bibus.cfg -- echo 'oopath = $(oopath)' >> $(datadir)/bibus/bibus.cfg -- echo 'ooure = $(ooure)' >> $(datadir)/bibus/bibus.cfg -- echo 'oobasis = $(oobasis)' >> $(datadir)/bibus/bibus.cfg -- echo 'docdir = $(datadir)/doc/bibus/html' >> $(datadir)/bibus/bibus.cfg -- echo 'licence = $(datadir)/doc/bibus/copying' >> $(datadir)/bibus/bibus.cfg -- echo 'localedir = $(datadir)/locale' >> $(datadir)/bibus/bibus.cfg -- echo 'systemconf = $(sysconfdir)/bibus.config' >> $(datadir)/bibus/bibus.cfg -+ echo '[PATH]' > $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'python = $(python)' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'oopath = $(oopath)' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'ooure = $(ooure)' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'oobasis = $(oobasis)' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'docdir = $(datadir)/doc/${PF}/html' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'localedir = $(datadir)/locale' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg -+ echo 'systemconf = $(sysconfdir)/bibus.config' >> $(DESTDIR)/$(pythondir)/bibus/bibus.cfg - endef - - define install-doc-en - # copying docs in from Docs/html/en/ for bibus-doc-en - cd Docs;\ -- find html/en/* -type f -exec install -m644 '{}' -D $(datadir)/doc/bibus/'{}' ';' -+ find html/en/* -type f -exec install -m644 '{}' -D $(DESTDIR)/$(datadir)/doc/${PF}/'{}' ';' - endef - - define compile - # compile recursively all the python files located in $(datadir)/bibus -- $(python) -c "import compileall ; compileall.compile_dir('$(datadir)/bibus')" -- $(python) -O -c "import compileall ; compileall.compile_dir('$(datadir)/bibus')" -+ echo "No compilation" - endef - - install-files: -@@ -83,15 +81,3 @@ install: - $(install-doc-en) - $(compile) - -- # write uninstaller in $(datadir)/bibus/Setup/uninstall.sh -- echo "#!/bin/sh" > $(datadir)/bibus/Setup/uninstall.sh -- echo "rm -rf $(datadir)/bibus" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm $(bindir)/bibus" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "find $(datadir)/locale -name bibus.mo -exec rm -f {} \;" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm $(sysconfdir)/bibus.config" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm $(man1dir)/bibus.1" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm -rf $(datadir)/doc/bibus" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm $(datadir)/applications/bibus.desktop" >> $(datadir)/bibus/Setup/uninstall.sh -- echo "rm $(datadir)/icons/hicolor/48x48/apps/bibus.png" >> $(datadir)/bibus/Setup/uninstall.sh -- chmod 744 $(datadir)/bibus/Setup/uninstall.sh -- # end uninstaller diff --git a/app-text/bibus/files/bibus-1.5.2-wx30.patch b/app-text/bibus/files/bibus-1.5.2-wx30.patch deleted file mode 100644 index b53486741817..000000000000 --- a/app-text/bibus/files/bibus-1.5.2-wx30.patch +++ /dev/null @@ -1,158 +0,0 @@ -Author: Jan Beyer <jan@beathovn.de> -Copyright: Copyright 2014 Jan Beyer -License: The same as the Bibus packaging. -Description: Patch to migrate bibus from wxpython2.8 to wxpython 3.0 - Thanks to Olly Betts for the script that did the main work: - http://anonscm.debian.org/cgit/collab-maint/wx-migration-tools.git - ---- a/ShortcutEd.py -+++ b/ShortcutEd.py -@@ -27,7 +27,7 @@ - self.category = category # edited category - self.short = short # current shortcuts list - # begin wxGlade: Capture.__init__ -- kwds["style"] = wx.DIALOG_MODAL|wx.CAPTION|wx.RESIZE_BORDER|wx.THICK_FRAME -+ kwds["style"] = wx.CAPTION|wx.RESIZE_BORDER|wx.RESIZE_BORDER - wx.Dialog.__init__(self, *args, **kwds) - self.label_1 = wx.StaticText(self, -1, _("Capture from field")) - self.choice_field = wx.Choice(self, -1, choices=[]) -@@ -110,7 +110,7 @@ - self.parentshort = short # we keep a copy for updating it latter - self.db = db # connection to the database - # begin wxGlade: ShortcutEd.__init__ -- kwds["style"] = wx.DIALOG_MODAL|wx.CAPTION|wx.RESIZE_BORDER|wx.THICK_FRAME -+ kwds["style"] = wx.CAPTION|wx.RESIZE_BORDER|wx.RESIZE_BORDER - wx.Dialog.__init__(self, *args, **kwds) - self.list_shortcuts = wx.ListCtrl(self, -1, style=wx.LC_REPORT|wx.LC_EDIT_LABELS|wx.LC_NO_HEADER|wx.LC_SINGLE_SEL|wx.SUNKEN_BORDER) - self.button_new = wx.Button(self, -1, _("New")) ---- a/bibus.py -+++ b/bibus.py -@@ -120,7 +120,7 @@ - # - class Bibus(wx.App): - def OnInit(self): -- wx.InitAllImageHandlers() -+ # no-op in wxPython2.8 and later: wx.InitAllImageHandlers() - self.SetAppName(APPNAME) - # reading and eventually converting the config file - if os.path.isfile( wx.StandardPaths.Get().GetUserDataDir() ): # old config file in $HOME/.bibus ---- a/Pref_Shortcuts.py -+++ b/Pref_Shortcuts.py -@@ -26,7 +26,7 @@ - def __init__(self, categories, *args, **kwds): - self.categories = categories # current categories in parent. may be different from BIB.SHORTCUTS - # begin wxGlade: NewCategory.__init__ -- kwds["style"] = wx.DIALOG_MODAL|wx.CAPTION|wx.RESIZE_BORDER|wx.THICK_FRAME -+ kwds["style"] = wx.CAPTION|wx.RESIZE_BORDER|wx.RESIZE_BORDER - wx.Dialog.__init__(self, *args, **kwds) - self.label_1 = wx.StaticText(self, -1, _("Name")) - self.text_ctrl_name = wx.TextCtrl(self, -1, "") -@@ -80,7 +80,7 @@ - def onFile(self,evt): - tmpfilen = self.text_ctrl_name.GetValue() - if not tmpfilen: tmpfilen = 'shortcut' -- filen = wx.FileSelector(_("Choose the file location and name"),default_filename=tmpfilen,parent=self, flags = wx.SAVE ) -+ filen = wx.FileSelector(_("Choose the file location and name"),default_filename=tmpfilen,parent=self, flags = wx.FD_SAVE ) - if filen: - self.text_ctrl_filen.SetValue(filen) - ---- a/moveFile.py -+++ b/moveFile.py -@@ -96,7 +96,7 @@ - - if __name__ == "__main__": - app = wx.PySimpleApp(0) -- wx.InitAllImageHandlers() -+ # no-op in wxPython2.8 and later: wx.InitAllImageHandlers() - dialog_1 = MoveFile(None, -1, "") - app.SetTopWindow(dialog_1) - dialog_1.Show() ---- a/OOo.py -+++ b/OOo.py -@@ -103,7 +103,7 @@ - self.saveDoc() - self.finalize() - except bibOOo_IOError: -- url = wx.FileSelector('Save as...',default_extension='odt',wildcard="%s (*.odt)|*.odt|%s (*.sxw)|*.sxw|%s (*.*)|*.*"%(_("OpenDocument Text"),_("OpenOffice.org Text Document"), _("All files")),flags=wx.SAVE|wx.OVERWRITE_PROMPT) -+ url = wx.FileSelector('Save as...',default_extension='odt',wildcard="%s (*.odt)|*.odt|%s (*.sxw)|*.sxw|%s (*.*)|*.*"%(_("OpenDocument Text"),_("OpenOffice.org Text Document"), _("All files")),flags=wx.FD_SAVE|wx.FD_OVERWRITE_PROMPT) - if url == '': - return - else: ---- a/BibFrame.py -+++ b/BibFrame.py -@@ -971,7 +971,7 @@ - - def __getFile(self,question=_("Please choose the file encoding"),mode='r',enc='ascii'): - """Get file and encoding. Return open file or None""" -- dlg = wx.FileDialog(self,_("Choose a File to import"),style = wx.OPEN | wx.CHANGE_DIR) -+ dlg = wx.FileDialog(self,_("Choose a File to import"),style = wx.FD_OPEN | wx.FD_CHANGE_DIR) - try: - answer = dlg.ShowModal() - filename = dlg.GetPath() -@@ -1048,7 +1048,7 @@ - # --------------------------------- File Export -------------------------------------------- - def __saveFile(self,question=_("Please choose the file encoding"),mode='r',enc='latin_1'): - """Get file and encoding. Return open file or None""" -- dlg = wx.FileDialog(self,_("Save as..."),style = wx.SAVE | wx.OVERWRITE_PROMPT | wx.CHANGE_DIR) -+ dlg = wx.FileDialog(self,_("Save as..."),style = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT | wx.FD_CHANGE_DIR) - try: - answer = dlg.ShowModal() - filename = dlg.GetPath() -@@ -1124,7 +1124,7 @@ - - def __saveFileHTML(self,question=_("Choose the destination file"),mode='w'): - """Get file. Return open file or None""" -- dlg = wx.FileDialog(self,_("Save as..."),style = wx.SAVE | wx.OVERWRITE_PROMPT | wx.CHANGE_DIR) -+ dlg = wx.FileDialog(self,_("Save as..."),style = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT | wx.FD_CHANGE_DIR) - try: - answer = dlg.ShowModal() - finally: -@@ -1176,7 +1176,7 @@ - ret = wx.GetSingleChoiceIndex(_('What do you want to export?'),_('Export'),[_('Selection'),_('Current key'),_('All')]) - if ret == -1: return - # get the file destination -- answer = wx.FileSelector(_("Choose the name of the SQLite database"), flags = wx.SAVE | wx.OVERWRITE_PROMPT | wx.CHANGE_DIR ) -+ answer = wx.FileSelector(_("Choose the name of the SQLite database"), flags = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT | wx.FD_CHANGE_DIR ) - if answer == '': return - # we create the database - try: -@@ -1746,7 +1746,7 @@ - - arcstarttime=time.time() - archivename=time.strftime('bibusbackup_%y%m%d_%H%M%S.tar', time.localtime(arcstarttime)) -- dlg = wx.FileDialog(self,_("Archive all user data into file ..."),style = wx.SAVE | wx.OVERWRITE_PROMPT | wx.CHANGE_DIR) -+ dlg = wx.FileDialog(self,_("Archive all user data into file ..."),style = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT | wx.FD_CHANGE_DIR) - dlg.SetDirectory(userDocsDir) - dlg.SetFilename(archivename) - dlg.SetWildcard("TAR archive (*.tar)|*.tar") ---- a/FirstStart/MySQL_Setup.py -+++ b/FirstStart/MySQL_Setup.py -@@ -533,7 +533,7 @@ - - if __name__ == "__main__": - app = wx.PySimpleApp(0) -- wx.InitAllImageHandlers() -+ # no-op in wxPython2.8 and later: wx.InitAllImageHandlers() - MySQL_Setup = MySQL_Setup_Main(None, -1, "") - app.SetTopWindow(MySQL_Setup) - MySQL_Setup.Show() ---- a/StyleEditor/FormatEditor.py -+++ b/StyleEditor/FormatEditor.py -@@ -33,7 +33,7 @@ - - class FormatEditor(wx.Dialog): - def __init__(self, *args, **kwds): -- #kwds["style"] = wx.TAB_TRAVERSAL | wx.CAPTION | wx.MINIMIZE_BOX | wx.MAXIMIZE_BOX | wx.THICK_FRAME -+ #kwds["style"] = wx.TAB_TRAVERSAL | wx.CAPTION | wx.MINIMIZE_BOX | wx.MAXIMIZE_BOX | wx.RESIZE_BORDER - kwds["style"] = wx.DEFAULT_FRAME_STYLE - self.filename = kwds['filename'] - del kwds['filename'] -@@ -130,7 +130,7 @@ - wx.MessageBox(_("The style name is not correct, please avoid: '/' under linux; '\\' and ':' under Windows"),_("Style name"),style=wx.OK|wx.ICON_ERROR) - - # def SaveAs(self,evt): --# self.filename = wx.FileSelector(_('Where to save the style file?'), flags = wx.SAVE | wx.OVERWRITE_PROMPT) -+# self.filename = wx.FileSelector(_('Where to save the style file?'), flags = wx.FD_SAVE | wx.FD_OVERWRITE_PROMPT) - # #print "%r"%self.filename - # if self.filename: - # self.Save(evt) diff --git a/app-text/bibus/metadata.xml b/app-text/bibus/metadata.xml deleted file mode 100644 index 114579753777..000000000000 --- a/app-text/bibus/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci@gentoo.org</email> - <name>Gentoo Science Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">bibus-biblio</remote-id> - </upstream> -</pkgmetadata> diff --git a/dev-db/SchemaSync/Manifest b/dev-db/SchemaSync/Manifest deleted file mode 100644 index 52b3b3738086..000000000000 --- a/dev-db/SchemaSync/Manifest +++ /dev/null @@ -1,3 +0,0 @@ -DIST SchemaSync-0.9.2.tar.gz 12828 BLAKE2B 050a027376282816bef34d6a7e146e590c5ebc279649f03d65129d33b9941c08aeb7bb58a302b9a77a62c8b7820b8dcbd6bc783c2405a25a4baca863baa53d3e SHA512 4f2522c05e3cf0957fe0d51cc48f3a45fd8eaeb341801bfdeb32bb7e959e8a250a84a162b80853f2010a99a932ef7d1b556579f7c77971f0e9a3e0fa87531599 -DIST SchemaSync-0.9.4.tar.gz 13824 BLAKE2B d98cd5cc0d6275ac5e4bb0272f4ab2879f4639b0e2986c175297ab3cc60930f63c3288cc2c3194784078958749c8e95a9e9ecdf660e071a61caac37b9659f2e3 SHA512 0087f5f634d2374def5e1dd2dd8d6d57d3fca9322bba23aee461487053233dba30ce889a87747ce2c11bd9a7e08418d619e9fd8b910ea303987b57bac7609248 -DIST SchemaSync-0.9.5.tar.gz 13973 BLAKE2B e76dd4e2e69875dedafed44214b6e30db6e71f4ee62a4bcd1cf1592c6727ae9d6f70190aa288559594d278b3962f8cb91eeb3d4b4b9014737be8b6b37acc9e84 SHA512 8ee37c099de8e3627d3d708c5642e4e0b7304306002bfa82d24cd2a733539bd0d5144d6afd18dd06e229a87b05ee569fe2febc727785a085bb32169581805934 diff --git a/dev-db/SchemaSync/SchemaSync-0.9.2-r1.ebuild b/dev-db/SchemaSync/SchemaSync-0.9.2-r1.ebuild deleted file mode 100644 index cd2e1b2955e8..000000000000 --- a/dev-db/SchemaSync/SchemaSync-0.9.2-r1.ebuild +++ /dev/null @@ -1,24 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="MySQL Schema Versioning and Migration Utility" -HOMEPAGE="https://github.com/mmatuson/SchemaSync" -# old download location is down -SRC_URI="mirror://gentoo/${P}.tar.gz" - -LICENSE="Apache-2.0" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/mysql-python[${PYTHON_USEDEP}] - dev-python/SchemaObject[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND}" diff --git a/dev-db/SchemaSync/SchemaSync-0.9.4.ebuild b/dev-db/SchemaSync/SchemaSync-0.9.4.ebuild deleted file mode 100644 index f11cb9686919..000000000000 --- a/dev-db/SchemaSync/SchemaSync-0.9.4.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="MySQL Schema Versioning and Migration Utility" -HOMEPAGE="https://github.com/mmatuson/SchemaSync" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="Apache-2.0" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/mysql-python[${PYTHON_USEDEP}] - dev-python/SchemaObject[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND}" diff --git a/dev-db/SchemaSync/SchemaSync-0.9.5.ebuild b/dev-db/SchemaSync/SchemaSync-0.9.5.ebuild deleted file mode 100644 index 77f6e927f299..000000000000 --- a/dev-db/SchemaSync/SchemaSync-0.9.5.ebuild +++ /dev/null @@ -1,23 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="MySQL Schema Versioning and Migration Utility" -HOMEPAGE="https://github.com/mmatuson/SchemaSync" -SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" - -LICENSE="Apache-2.0" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - dev-python/setuptools[${PYTHON_USEDEP}] - dev-python/mysql-python[${PYTHON_USEDEP}] - dev-python/SchemaObject[${PYTHON_USEDEP}]" -DEPEND="${RDEPEND}" diff --git a/dev-db/SchemaSync/metadata.xml b/dev-db/SchemaSync/metadata.xml deleted file mode 100644 index 5cddb3363d44..000000000000 --- a/dev-db/SchemaSync/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>blueness@gentoo.org</email> - <name>Anthony G. Basile</name> - </maintainer> - <upstream> - <remote-id type="github">mmatuson/SchemaSync</remote-id> - <remote-id type="pypi">SchemaSync</remote-id> - </upstream> -</pkgmetadata> diff --git a/dev-python/squaremap/Manifest b/dev-python/squaremap/Manifest deleted file mode 100644 index 98a05edada31..000000000000 --- a/dev-python/squaremap/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST SquareMap-1.0.4.tar.gz 7439 BLAKE2B 34b5e5eaf45c597c4591eec291f0fa2e001f6df432eda0a3b98f8e596af257f1261d083b25eea25fedd9d415e00cc20e318f94fe2ce85b3abd2c20ccd51f2d3c SHA512 d01e61697571360b58e762787237bb8533b3de238f26323380a8b0b90d72d2f00e2a43e7f6742fbbb3483573493b0d83568e0651cbf9bdd463b911d09bf27e76 diff --git a/dev-python/squaremap/metadata.xml b/dev-python/squaremap/metadata.xml deleted file mode 100644 index b6d7cc2ced82..000000000000 --- a/dev-python/squaremap/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>swegener@gentoo.org</email> - <name>Sven Wegener</name> - </maintainer> - <maintainer type="project"> - <email>python@gentoo.org</email> - <name>Python</name> - </maintainer> - <upstream> - <remote-id type="pypi">SquareMap</remote-id> - </upstream> -</pkgmetadata> diff --git a/dev-python/squaremap/squaremap-1.0.4.ebuild b/dev-python/squaremap/squaremap-1.0.4.ebuild deleted file mode 100644 index 0262a588d836..000000000000 --- a/dev-python/squaremap/squaremap-1.0.4.ebuild +++ /dev/null @@ -1,26 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI="5" - -MY_PN="SquareMap" -MY_P="${MY_PN}-${PV/_beta/b}" - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 - -DESCRIPTION="Hierarchic data-visualisation control for wxPython" -HOMEPAGE="https://pypi.org/project/SquareMap/" -SRC_URI="mirror://pypi/${MY_PN:0:1}/${MY_PN}/${MY_P}.tar.gz" - -LICENSE="BSD" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="${PYTHON_DEPS}" -RDEPEND="${DEPEND} - dev-python/wxpython:3.0" - -S="${WORKDIR}"/${MY_P} diff --git a/dev-util/wxglade/Manifest b/dev-util/wxglade/Manifest deleted file mode 100644 index c353e1fe6ec5..000000000000 --- a/dev-util/wxglade/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST wxGlade-0.8.2.zip 4682765 BLAKE2B b9c6a0fe5ca89dce4ba8236c1db079df76777ecff34c00b9251088f39e5c853c8b775a2d941fa7f45a4f607354b85ab6cb26b387bd7e81f4db9cf458944fecc0 SHA512 d74f0b88509232b5f573af70f643af840c96e810060fdffc413f71ad03acca0fdb0324fefe43ab2a36473d8b053259099883d4aae51afff0c1c0b0ece492f9d7 diff --git a/dev-util/wxglade/files/wxglade-0.6.3-wxversion.patch b/dev-util/wxglade/files/wxglade-0.6.3-wxversion.patch deleted file mode 100644 index f788e0bff492..000000000000 --- a/dev-util/wxglade/files/wxglade-0.6.3-wxversion.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff -Naur wxGlade-0.6.1-orig/main.py wxGlade-0.6.1/main.py ---- wxGlade-0.6.1/main.py 2007-10-25 01:03:22.000000000 -0600 -+++ wxGlade-0.6.1/main.py 2007-12-04 09:36:20.000000000 -0600 -@@ -7,7 +7,7 @@ - # THIS PROGRAM COMES WITH NO WARRANTY - - import wxversion --wxversion.ensureMinimal("2.6") -+wxversion.select("2.8") - - #from wxPython.wx import * - import wx diff --git a/dev-util/wxglade/metadata.xml b/dev-util/wxglade/metadata.xml deleted file mode 100644 index a2cf0a120bb2..000000000000 --- a/dev-util/wxglade/metadata.xml +++ /dev/null @@ -1,11 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>wxwidgets@gentoo.org</email> - <name>Gentoo wxWidgets Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">wxglade</remote-id> - </upstream> -</pkgmetadata> diff --git a/dev-util/wxglade/wxglade-0.8.2-r1.ebuild b/dev-util/wxglade/wxglade-0.8.2-r1.ebuild deleted file mode 100644 index f3625d5a09d5..000000000000 --- a/dev-util/wxglade/wxglade-0.8.2-r1.ebuild +++ /dev/null @@ -1,55 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -PYTHON_COMPAT=( python2_7 ) - -inherit eutils python-single-r1 - -MY_P="wxGlade-${PV}" - -DESCRIPTION="Glade-like GUI designer which can generate Python, Perl, C++ or XRC code" -HOMEPAGE="http://wxglade.sourceforge.net/" -SRC_URI="mirror://sourceforge/wxglade/${MY_P}.zip" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="amd64 ~ppc ~sparc x86" - -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - $(python_gen_cond_dep ' - dev-python/wxpython:3.0[${PYTHON_MULTI_USEDEP}] - ') -" -DEPEND="${RDEPEND} - app-arch/unzip -" - -RESTRICT="test" #656934 - -S="${WORKDIR}/${MY_P}" - -src_compile() { - python_fix_shebang wxglade.py -} - -src_install() { - einstalldocs - - # Install a bigger icon - newicon docs_old/html/mondrian_200x200.png ${PN}.png - - dodoc -r docs - rm -r docs docs_old || die - - python_moduleinto /usr/lib/wxglade - python_domodule . - dosym ../../share/doc/${PF}/docs /usr/lib/wxglade/docs - fperms 775 /usr/lib/wxglade/wxglade.py - dosym ../lib/wxglade/wxglade.py /usr/bin/wxglade - - make_desktop_entry wxglade wxGlade wxglade "Development;GUIDesigner" -} diff --git a/media-gfx/fontypython/Manifest b/media-gfx/fontypython/Manifest deleted file mode 100644 index 9500d7555f6c..000000000000 --- a/media-gfx/fontypython/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST fontypython-0.4.4.tar.gz 361335 BLAKE2B 9e9f3f0e3b67509851fbf0c061af5754991d4087d7f4a5b9ec0ca176690c4f0125fab82546cdbddd39e0d1f2b4631396628df7c9d09a0dabadd9f3f2651bce6c SHA512 a89c654c9dcd8fc89d3ad91772f856d2d2570a96b3b60f52eed9db217f45e91a55f3044f0e4d1736c5402cde3a6598a353ae59285c892e80034f7baba15f9825 diff --git a/media-gfx/fontypython/files/0001-Do-not-crash-on-empty-pogs-list.patch b/media-gfx/fontypython/files/0001-Do-not-crash-on-empty-pogs-list.patch deleted file mode 100644 index b652053596c6..000000000000 --- a/media-gfx/fontypython/files/0001-Do-not-crash-on-empty-pogs-list.patch +++ /dev/null @@ -1,21 +0,0 @@ -From: Pietro Battiston <me@pietrobattiston.it> -Date: Sun, 21 Dec 2014 11:50:28 +0100 -Subject: Do not crash on empty pogs list - ---- - fontypythonmodules/gui_PogChooser.py | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/fontypythonmodules/gui_PogChooser.py b/fontypythonmodules/gui_PogChooser.py -index 94b7f2e..f233529 100644 ---- a/fontypythonmodules/gui_PogChooser.py -+++ b/fontypythonmodules/gui_PogChooser.py -@@ -80,7 +80,7 @@ class PogChooser(wx.ListCtrl) : - i = self.FindItem(-1, select) - self.indexselected = i # Set this to help initial icon settings. - self.Select(i, True) -- else: -+ elif self.__poglistCopy: - self.Select(0, False) - self.indexselected = -1 - diff --git a/media-gfx/fontypython/files/0002-Removed-unused-code-which-causes-crash-with-wx-3.0.patch b/media-gfx/fontypython/files/0002-Removed-unused-code-which-causes-crash-with-wx-3.0.patch deleted file mode 100644 index e6f8fb634e83..000000000000 --- a/media-gfx/fontypython/files/0002-Removed-unused-code-which-causes-crash-with-wx-3.0.patch +++ /dev/null @@ -1,134 +0,0 @@ -From: Pietro Battiston <me@pietrobattiston.it> -Date: Sun, 21 Dec 2014 09:14:19 +0100 -Subject: Removed unused code which causes crash with wx 3.0 - ---- - fontypython | 2 -- - fontypythonmodules/dialogues.py | 4 ---- - fontypythonmodules/gui_Left.py | 4 ---- - fontypythonmodules/gui_Middle.py | 5 ----- - fontypythonmodules/gui_PogChooser.py | 4 ---- - fontypythonmodules/gui_Right.py | 4 ---- - fontypythonmodules/gui_ScrolledFontView.py | 4 ---- - fontypythonmodules/wxgui.py | 4 ---- - 8 files changed, 31 deletions(-) - -diff --git a/fontypython b/fontypython -index a05290f..e46e34e 100755 ---- a/fontypython -+++ b/fontypython -@@ -72,8 +72,6 @@ else: # err code -11 - - ## Setup wxPython to access translations : enables the stock buttons. - localedir = "fontypythonmodules/locales" -- langid = wx.LANGUAGE_DEFAULT -- mylocale = wx.Locale( langid ) - - iPC = PC.PathControl() - -diff --git a/fontypythonmodules/dialogues.py b/fontypythonmodules/dialogues.py -index 1fbff5f..eba7ab3 100644 ---- a/fontypythonmodules/dialogues.py -+++ b/fontypythonmodules/dialogues.py -@@ -23,10 +23,6 @@ import wx - import wx.html as html - - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - ## langcode = locale.getlocale()[0] # I must not use getlocale... - ## This is suggested by Martin: - loc = locale.setlocale(locale.LC_CTYPE) # use *one* of the categories (not LC_ALL) -diff --git a/fontypythonmodules/gui_Left.py b/fontypythonmodules/gui_Left.py -index 5451f39..7b1f0c6 100644 ---- a/fontypythonmodules/gui_Left.py -+++ b/fontypythonmodules/gui_Left.py -@@ -17,10 +17,6 @@ - - import wx, os - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - - from pubsub import * - from wxgui import ps -diff --git a/fontypythonmodules/gui_Middle.py b/fontypythonmodules/gui_Middle.py -index 470e3ea..9af3f9f 100644 ---- a/fontypythonmodules/gui_Middle.py -+++ b/fontypythonmodules/gui_Middle.py -@@ -19,11 +19,6 @@ import wx - import wx.lib.stattext - import wx.lib.buttons as buttons - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- -- - from pubsub import * - from wxgui import ps - -diff --git a/fontypythonmodules/gui_PogChooser.py b/fontypythonmodules/gui_PogChooser.py -index f233529..c679191 100644 ---- a/fontypythonmodules/gui_PogChooser.py -+++ b/fontypythonmodules/gui_PogChooser.py -@@ -17,10 +17,6 @@ - - import wx, locale - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - from pubsub import * - from wxgui import ps - -diff --git a/fontypythonmodules/gui_Right.py b/fontypythonmodules/gui_Right.py -index adefa1d..ea5062b 100644 ---- a/fontypythonmodules/gui_Right.py -+++ b/fontypythonmodules/gui_Right.py -@@ -17,10 +17,6 @@ - - import wx - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - from pubsub import * - from wxgui import ps - -diff --git a/fontypythonmodules/gui_ScrolledFontView.py b/fontypythonmodules/gui_ScrolledFontView.py -index d7b3d2f..3e35d62 100644 ---- a/fontypythonmodules/gui_ScrolledFontView.py -+++ b/fontypythonmodules/gui_ScrolledFontView.py -@@ -20,10 +20,6 @@ import wx.lib.scrolledpanel - - from pubsub import * - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - import fpsys # Global objects - - from gui_Fitmap import * #Also brings in 'ps' variable -diff --git a/fontypythonmodules/wxgui.py b/fontypythonmodules/wxgui.py -index da80d17..6e6716a 100644 ---- a/fontypythonmodules/wxgui.py -+++ b/fontypythonmodules/wxgui.py -@@ -23,10 +23,6 @@ import fpversion - ## Now, bring in all those big modules - import wx - --## Setup wxPython to access translations : enables the stock buttons. --langid = wx.LANGUAGE_DEFAULT # Picks this up from $LANG --mylocale = wx.Locale( langid ) -- - ## Fetch my own pubsub stuff - from pubsub import * - ps = CPubsub() diff --git a/media-gfx/fontypython/files/0003-Adapt-to-wxpython-3.0-which-enforces-assertions-on-L.patch b/media-gfx/fontypython/files/0003-Adapt-to-wxpython-3.0-which-enforces-assertions-on-L.patch deleted file mode 100644 index 4875a15ff050..000000000000 --- a/media-gfx/fontypython/files/0003-Adapt-to-wxpython-3.0-which-enforces-assertions-on-L.patch +++ /dev/null @@ -1,28 +0,0 @@ -From: Pietro Battiston <me@pietrobattiston.it> -Date: Sun, 21 Dec 2014 11:50:09 +0100 -Subject: Adapt to wxpython 3.0, which enforces assertions on ListItems ids. - ---- - fontypythonmodules/gui_PogChooser.py | 2 ++ - 1 file changed, 2 insertions(+) - -diff --git a/fontypythonmodules/gui_PogChooser.py b/fontypythonmodules/gui_PogChooser.py -index c679191..4cdf772 100644 ---- a/fontypythonmodules/gui_PogChooser.py -+++ b/fontypythonmodules/gui_PogChooser.py -@@ -200,6 +200,7 @@ class PogChooser(wx.ListCtrl) : - li.SetImage(i) - li.SetText(p) - id = wx.NewId() -+ li.SetId(id) - PogChooser.__poglistCopy[id] = p # record the pog name - row = self.InsertItem( li ) - self.SetItemData( row, id ) # associate back to __poglistCopy -@@ -214,6 +215,7 @@ class PogChooser(wx.ListCtrl) : - li.SetImage(0) - li.SetText(pogname) - id = wx.NewId() -+ li.SetId(id) - self.__poglistCopy[id] = pogname - row = self.InsertItem(li) - self.SetItemData( row, id ) diff --git a/media-gfx/fontypython/files/fontypython-pillow.patch b/media-gfx/fontypython/files/fontypython-pillow.patch deleted file mode 100644 index 9b7966f55061..000000000000 --- a/media-gfx/fontypython/files/fontypython-pillow.patch +++ /dev/null @@ -1,41 +0,0 @@ -https://bugs.gentoo.org/show_bug.cgi?id=471524 - -diff --git a/fontypythonmodules/fontcontrol.py b/fontypythonmodules/fontcontrol.py -index e156758..cff34f5 100644 ---- a/fontypythonmodules/fontcontrol.py -+++ b/fontypythonmodules/fontcontrol.py -@@ -16,7 +16,7 @@ - ## along with Fonty Python. If not, see <http://www.gnu.org/licenses/>. - - import os, sys, locale, glob, errno --import Image, ImageFont, ImageDraw -+from PIL import Image, ImageFont, ImageDraw - import fontybugs, fpsys - from pathcontrol import * - -diff --git a/fontypythonmodules/fpsys.py b/fontypythonmodules/fpsys.py -index f9572ae..fa1a98f 100644 ---- a/fontypythonmodules/fpsys.py -+++ b/fontypythonmodules/fpsys.py -@@ -159,7 +159,7 @@ def checkFonts( dirtocheck, printer ): - global segfonts - - code = """ --import ImageFont -+from PIL import ImageFont - try: - font=ImageFont.truetype("%s", 24, 0) - dud=font.getname() -diff --git a/fontypythonmodules/sanitycheck.py b/fontypythonmodules/sanitycheck.py -index cf4fcc1..7e46e9a 100644 ---- a/fontypythonmodules/sanitycheck.py -+++ b/fontypythonmodules/sanitycheck.py -@@ -24,7 +24,7 @@ import imp - - ## PIL : Is it there? - try: -- import Image, ImageFont, ImageDraw -+ from PIL import Image, ImageFont, ImageDraw - except: - print strings.PILError - raise SystemExit diff --git a/media-gfx/fontypython/fontypython-0.4.4-r3.ebuild b/media-gfx/fontypython/fontypython-0.4.4-r3.ebuild deleted file mode 100644 index ca9ebc36f3c3..000000000000 --- a/media-gfx/fontypython/fontypython-0.4.4-r3.ebuild +++ /dev/null @@ -1,38 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI="5" -WX_GTK_VER=3.0 -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 multilib wxwidgets - -DESCRIPTION="Font preview application" -HOMEPAGE="https://savannah.nongnu.org/projects/fontypython" -SRC_URI="mirror://nongnu/${PN}/${P}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="" - -# Crashes w/ debug build of wxGTK (#201315) -DEPEND="dev-python/pillow[${PYTHON_USEDEP}] - dev-python/wxpython:${WX_GTK_VER}[${PYTHON_USEDEP}] - x11-libs/wxGTK:${WX_GTK_VER}[-debug]" -RDEPEND="${DEPEND}" - -PATCHES=( "${FILESDIR}/${PN}-pillow.patch" - "${FILESDIR}"/0001-Do-not-crash-on-empty-pogs-list.patch - "${FILESDIR}"/0002-Removed-unused-code-which-causes-crash-with-wx-3.0.patch - "${FILESDIR}"/0003-Adapt-to-wxpython-3.0-which-enforces-assertions-on-L.patch ) - -src_prepare() { - distutils-r1_src_prepare - need-wxwidgets unicode -} - -src_install() { - distutils-r1_src_install - doman "${S}"/fontypython.1 -} diff --git a/media-gfx/fontypython/metadata.xml b/media-gfx/fontypython/metadata.xml deleted file mode 100644 index cc081897d48c..000000000000 --- a/media-gfx/fontypython/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>fonts@gentoo.org</email> - <name>Fonts</name> - </maintainer> -</pkgmetadata> diff --git a/media-gfx/fr0st/Manifest b/media-gfx/fr0st/Manifest deleted file mode 100644 index 74904a76c4fb..000000000000 --- a/media-gfx/fr0st/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST fr0st-1.4-src.tgz 1535978 BLAKE2B 1d1700665f6747d0665594e255d8604b1fad576aae21b73a435aa95174ef199bce0fe6d436ee3f5072fe5474657995533675bf7c9b16e6787523b1db4bb189d6 SHA512 d4ececca724bef264097466328e98699efbf82d999107a1ed8b21b938fd5025b888197f021ac56c7fb008226f0230bd058cb94efec61bb59d67f2263d3140ec5 diff --git a/media-gfx/fr0st/files/fr0st-1.4-colour.patch b/media-gfx/fr0st/files/fr0st-1.4-colour.patch deleted file mode 100644 index 9fb17aadaab7..000000000000 --- a/media-gfx/fr0st/files/fr0st-1.4-colour.patch +++ /dev/null @@ -1,9 +0,0 @@ ---- fr0stlib/gui/canvas.py~ 2011-05-14 19:58:25.000000000 +0200 -+++ fr0stlib/gui/canvas.py 2016-02-20 17:47:25.853322560 +0100 -@@ -79,7 +79,7 @@ - - def SetBrush(self, FillColor, FillStyle): - r,g,b = FillColor -- c = wx.Color(r,g,b, self.Opacity) -+ c = wx.Colour(r,g,b, self.Opacity) - self.Brush = wx.Brush(c) diff --git a/media-gfx/fr0st/fr0st-1.4-r2.ebuild b/media-gfx/fr0st/fr0st-1.4-r2.ebuild deleted file mode 100644 index 2e138ef92e15..000000000000 --- a/media-gfx/fr0st/fr0st-1.4-r2.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 -WX_GTK_VER="3.0" -PYTHON_COMPAT=( python2_7 ) - -inherit eutils multilib python-single-r1 wxwidgets - -DESCRIPTION="A fractal flame editor" -HOMEPAGE="https://fr0st.wordpress.com/" -SRC_URI="https://launchpad.net/${PN}/trunk/${PV}.0/+download/${P}-src.tgz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - dev-python/wxpython:${WX_GTK_VER} - >=media-gfx/flam3-3.0.1 -" -DEPEND="${RDEPEND}" - -S="${WORKDIR}/${P}-src" - -pkg_setup() { - fr0st_libdir="/usr/$(get_libdir)/fr0st" - fr0st_sharedir="/usr/share/fr0st" - - python-single-r1_pkg_setup -} - -src_prepare() { - epatch "${FILESDIR}"/${P}-colour.patch #564106 - python_fix_shebang . - need-wxwidgets unicode -} - -src_install() { - insinto "${fr0st_sharedir}" - doins -r icons samples - - insinto "${fr0st_libdir}" - doins -r fr0stlib - - exeinto "${fr0st_libdir}" - doexe fr0st.py - - dosym "${fr0st_libdir}"/fr0st.py /usr/bin/fr0st - dosym "${fr0st_sharedir}"/icons/fr0st.png /usr/share/pixmaps/fr0st.png - - make_desktop_entry fr0st fr0st - - dodoc changelog.txt -} diff --git a/media-gfx/fr0st/metadata.xml b/media-gfx/fr0st/metadata.xml deleted file mode 100644 index d8b5cf01c15e..000000000000 --- a/media-gfx/fr0st/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <!-- maintainer-needed --> - <upstream> - <remote-id type="launchpad">fr0st</remote-id> - </upstream> -</pkgmetadata> diff --git a/profiles/package.mask b/profiles/package.mask index a1a883354c0b..5f59258f4016 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -317,44 +317,6 @@ dev-tex/cjk-latex # patch exists, but we won't become new upstream. Masked for removal in 30 days. games-board/teg -# Aaron Bauman <bman@gentoo.org> (2020-06-29) -# More Py2 only stuff. Plz see -dev ML for discussions -# Remove bindings, port to Py3, etc -# Removal in 30 days -app-dicts/opendict -app-editors/editra -app-office/taskcoach -app-backup/holland -app-backup/holland-backup-example -app-backup/holland-backup-pgdump -app-backup/holland-backup-random -app-backup/holland-backup-sqlite -app-backup/holland-lib-common -app-backup/holland-lib-lvm -app-cdr/burn-cd -app-editors/leo -app-emulation/playonlinux -app-text/bibus -dev-db/SchemaSync -dev-python/squaremap -dev-util/wxglade -media-gfx/fontypython -media-gfx/fr0st -sci-chemistry/apbs -sci-chemistry/eden -sci-chemistry/p3d -sci-chemistry/pdb2pqr -sci-chemistry/pdb-tools -sci-chemistry/prodecomp -sci-chemistry/pymol-plugins-caver -sci-chemistry/pymol-plugins-dssp -sci-chemistry/pymol-plugins-promol -sci-chemistry/relax -sci-chemistry/sparky -www-apps/viewvc -www-misc/surl -x11-misc/nts - # Stephan Hartmann <stha09@googlemail.com> (2020-06-29) # Dev channel releases are only for people who # are developers or want more experimental features diff --git a/sci-chemistry/apbs/Manifest b/sci-chemistry/apbs/Manifest deleted file mode 100644 index 1a146495e053..000000000000 --- a/sci-chemistry/apbs/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST apbs-1.4.1.zip 37999283 BLAKE2B 2301deb7ab4eb2f20098cf63df180bb53189e42a89cd5559357cdcf08e84d27a44eafe8557bb460574802d24d29741ad4606dc3bd7f32911d0d0f2c7453d6470 SHA512 3a127af3940054e5a43b3c0c620507f4f9baa69049e5a0933d8e8825458ad2faba840392752de49fe68d91e2054fb1394cf87bb5bb1c0b48305368e2f404cf6a diff --git a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild b/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild deleted file mode 100644 index 4ea1cfcd1fad..000000000000 --- a/sci-chemistry/apbs/apbs-1.4.1-r2.ebuild +++ /dev/null @@ -1,129 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) -DISTUTILS_SINGLE_IMPL=true -COMMIT="74fcb8676de69ed04ddab8976a8b05a6caaf4d65" -inherit cmake-utils distutils-r1 flag-o-matic toolchain-funcs - -DESCRIPTION="Evaluation of electrostatic properties of nanoscale biomolecular systems" -HOMEPAGE="https://www.poissonboltzmann.org/apbs/" -#SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz" -SRC_URI="https://github.com/Electrostatics/apbs-pdb2pqr/archive/${COMMIT}.zip -> ${P}.zip" - -SLOT="0" -LICENSE="BSD" -KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" -IUSE="debug doc examples fast +fetk iapbs mpi openmp python tools" - -REQUIRED_USE=" - iapbs? ( fetk ) - mpi? ( !python ) - python? ( tools fetk iapbs ${PYTHON_REQUIRED_USE} )" - -RDEPEND=" - dev-cpp/eigen:3 - dev-libs/maloc[mpi=] - sys-libs/readline - virtual/blas - fetk? ( - sci-libs/amd - sci-libs/fetk - sci-libs/superlu - sci-libs/umfpack - ) - mpi? ( virtual/mpi ) - python? ( ${PYTHON_DEPS} ) -" -DEPEND="${RDEPEND} - virtual/pkgconfig - doc? ( app-doc/doxygen ) -" - -S="${WORKDIR}"/${PN}-pdb2pqr-${COMMIT}/${PN} - -PATCHES=( - "${FILESDIR}"/${P}-multilib.patch - "${FILESDIR}"/${P}-manip.patch - "${FILESDIR}"/${P}-python.patch -) - -src_prepare() { - cmake-utils_src_prepare - append-cppflags $($(tc-getPKG_CONFIG) --cflags eigen3) - - sed \ - -e "s:-lblas:$($(tc-getPKG_CONFIG) --libs blas):g" \ - -e "/TOOLS_PATH/d" \ - -i CMakeLists.txt || die - use doc && MAKEOPTS+=" -j1" - if use python; then - unset PATCHES || die - cd tools/python || die - distutils-r1_src_prepare - fi -} - -src_configure() { - local mycmakeargs=( - -DCMAKE_SKIP_RPATH=ON - -DTOOLS_PATH="${ED%/}"/usr - -DSYS_LIBPATHS="${EPREFIX}"/usr/$(get_libdir) - -DLIBRARY_INSTALL_PATH=$(get_libdir) - -DFETK_PATH="${EPREFIX}"/usr/ - -DBUILD_SHARED_LIBS=ON - -DENABLE_QUIT=OFF - -DBUILD_DOC=$(usex doc) - -DBUILD_TOOLS=$(usex tools) - -DENABLE_BEM=OFF -# ENABLE_BEM: Boundary element method using TABIPB - -DENABLE_DEBUG=$(usex debug) - -DENABLE_VERBOSE_DEBUG=$(usex debug) - -DENABLE_FAST=$(usex fast) - -DENABLE_FETK=$(usex fetk) - -DENABLE_MPI=$(usex mpi) - -DENABLE_PYTHON=$(usex python) -# ENABLE_TINKER: Enable TINKER support - -DENABLE_iAPBS=$(usex iapbs) -# MAX_MEMORY: Set the maximum memory (in MB) to be used for a job - ) - cmake-utils_src_configure - if use python; then - cd tools/python || die - distutils-r1_src_configure - fi -} - -src_compile() { - cmake-utils_src_compile - if use python; then - append-ldflags -L"${S}"/lib - cd tools/python || die - distutils-r1_src_compile - fi -} - -src_test() { - python_setup - cd tests || die - LD_LIBRARY_PATH="${S}"/lib "${PYTHON}" apbs_tester.py -l log || die - grep -q 'FAILED' log && die "Tests failed" -} - -src_install() { - dodir /usr/bin - cmake-utils_src_install - local i - for i in "${ED}"/usr/bin/*; do - if [[ ! "${i}" =~ .*apbs$ ]]; then - mv "${i}" "${i}-apbs" || die - fi - done - if use python; then - cd tools/python || die - distutils-r1_src_install - rm -rf "${ED}"/usr/share/apbs/tools/python || die - fi -} diff --git a/sci-chemistry/apbs/files/apbs-1.4.1-manip.patch b/sci-chemistry/apbs/files/apbs-1.4.1-manip.patch deleted file mode 100644 index 090a27d8a5a6..000000000000 --- a/sci-chemistry/apbs/files/apbs-1.4.1-manip.patch +++ /dev/null @@ -1,50 +0,0 @@ - apbs/CMakeLists.txt | 2 +- - apbs/tools/CMakeLists.txt | 4 ---- - apbs/tools/mesh/CMakeLists.txt | 4 ++-- - 4 files changed, 5 insertions(+), 9 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 8917fc4..5152008 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -293,7 +293,7 @@ option(ENABLE_FETK "Enable the finite element solver" OFF) - - if(ENABLE_FETK) - message(STATUS "Checking for fetk components") -- set(FETK_ENALBED 1) -+ set(FETK_ENABLED 1) - - list(APPEND APBS_LIBS "-lstdc++") - list(APPEND APBS_LIBS "-L${FETK_PATH}/lib") -diff --git a/tools/manip/CMakeLists.txt b/tools/manip/CMakeLists.txt -index 937dac7..5768cc5 100644 ---- a/tools/manip/CMakeLists.txt -+++ b/tools/manip/CMakeLists.txt -@@ -4,9 +4,9 @@ set(LIBS "") - list(APPEND LIBS "apbs_generic") - list(APPEND LIBS "apbs_mg") - list(APPEND LIBS "apbs_pmgc") --if(FETK_ENALBED) -+if(FETK_ENABLED) - list(APPEND LIBS "apbs_fem") --endif(FETK_ENALBED) -+endif(FETK_ENABLED) - - message(STATUS "libraries: ${LIBS}") - -diff --git a/tools/mesh/CMakeLists.txt b/tools/mesh/CMakeLists.txt -index 1406377..6e6dfb9 100644 ---- a/tools/mesh/CMakeLists.txt -+++ b/tools/mesh/CMakeLists.txt -@@ -4,9 +4,9 @@ set(LIBS "") - list(APPEND LIBS "apbs_generic") - list(APPEND LIBS "apbs_mg") - list(APPEND LIBS "apbs_pmgc") --if(FETK_ENALBED) -+if(FETK_ENABLED) - list(APPEND LIBS "apbs_fem") --endif(FETK_ENALBED) -+endif(FETK_ENABLED) - - message(STATUS "libraries: ${LIBS}") - diff --git a/sci-chemistry/apbs/files/apbs-1.4.1-multilib.patch b/sci-chemistry/apbs/files/apbs-1.4.1-multilib.patch deleted file mode 100644 index a4e2d1761cf4..000000000000 --- a/sci-chemistry/apbs/files/apbs-1.4.1-multilib.patch +++ /dev/null @@ -1,92 +0,0 @@ - CMakeLists.txt | 18 +++++++++--------- - src/CMakeLists.txt | 1 - - src/fem/CMakeLists.txt | 2 +- - src/pmgc/CMakeLists.txt | 2 +- - 4 files changed, 11 insertions(+), 12 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index 75ddbdd..c46f5e7 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -61,7 +61,7 @@ set(LIBRARY_OUTPUT_PATH ${APBS_ROOT}/lib) - set(TOOLS_PATH ${APBS_ROOT}/tools) - set(APBS_BINARY ${EXECUTABLE_OUTPUT_PATH}/apbs) - --set(LIBRARY_INSTALL_PATH lib) -+set(LIBRARY_INSTALL_PATH ${CMAKE_INSTALL_LIBDIR}) - set(HEADER_INSTALL_PATH include/apbs) - set(EXECUTABLE_INSTALL_PATH bin) - set(SHARE_INSTALL_PATH share/apbs) -@@ -93,8 +93,6 @@ set(CMAKE_INCLUDE_PATH "${CMAKE_INCLUDE_PATH}") - list(APPEND CMAKE_INCLUDE_PATH /usr/include) - list(APPEND CMAKE_INCLUDE_PATH /usr/local/include) - --set(APBS_LIBS "-L${APBS_ROOT}/lib -lapbs_geoflow") -- - ################################################################################ - # Enable ansi pedantic compiling # - ################################################################################ -@@ -193,9 +191,11 @@ if(ENABLE_BEM) - else() - set(TABI_LIBRARY_BASENAME ${CMAKE_STATIC_LIBRARY_PREFIX}${TABI}${CMAKE_STATIC_LIBRARY_SUFFIX}) - endif() -- -+ -+ file(GLOB MODS ${LIBRARY_OUTPUT_PATH}/*.mod) -+ - install( -- FILES ${LIBRARY_OUTPUT_PATH}/${TABI_LIBRARY_BASENAME} ${LIBRARY_OUTPUT_PATH}/*.mod -+ FILES ${LIBRARY_OUTPUT_PATH}/${TABI_LIBRARY_BASENAME} ${MODS} - DESTINATION ${LIBRARY_INSTALL_PATH} - ) - set(TABI_LIBRARY ${APBS_ROOT}/${LIBRARY_INSTALL_PATH}/${TABI_LIBRARY_BASENAME}) -@@ -210,7 +210,7 @@ if(ENABLE_BEM) - endif() - get_filename_component(LIBGFORTRANPATH ${LIBGFORTRANPATH} PATH) - find_path(LIBGFORTRAN_PATH ${LIBGFORTRAN_NAME} PATH ${LIBGFORTRANPATH}) -- list(APPEND APBS_LIBS "-L${APBS_ROOT}/${LIBRARY_INSTALL_PATH} -L${LIBGFORTRAN_PATH} -lgfortran -ltabipb" ) -+ list(APPEND APBS_LIBS "-L${APBS_ROOT}/lib -L${LIBGFORTRAN_PATH} -lgfortran -ltabipb" ) - endif() # ENABLE_BEM - - find_file( # this should be find path... -@@ -228,7 +228,7 @@ endif() - - - find_library(MALOC_LIBRARY "maloc" -- PATHS ${FETK_PATH}/lib ${CONTRIB_PATH} -+ PATHS ${FETK_PATH}/${CMAKE_INSTALL_LIBDIR} ${CONTRIB_PATH} - DOC "The fetk/maloc library" - ) - if(MALOC_LIBRARY) -@@ -296,9 +296,9 @@ if(ENABLE_FETK) - set(FETK_ENALBED 1) - - list(APPEND APBS_LIBS "-lstdc++") -- list(APPEND APBS_LIBS "-L${FETK_PATH}/lib") -+ list(APPEND APBS_LIBS "-L${FETK_PATH}/${CMAKE_INSTALL_LIBDIR}") - list(APPEND APBS_LIBS -lamd -lpunc -lmc -lgamer -lsuperlu -lumfpack ---lblas -lvf2c -ltetgen -ltriangle -lg2c -lreadline ) -+-lblas -lvf2c -ltetgen -ltriangle -lreadline ) - - SET(HAVE_MC_H YES) - endif() -diff --git a/src/fem/CMakeLists.txt b/src/fem/CMakeLists.txt -index 5a950c2..dc37f48 100644 ---- a/src/fem/CMakeLists.txt -+++ b/src/fem/CMakeLists.txt -@@ -12,4 +12,4 @@ add_items( - vpee.h - ) - --add_sublibrary(fem) -+add_sublibrary(fem apbs_geoflow) -diff --git a/src/pmgc/CMakeLists.txt b/src/pmgc/CMakeLists.txt -index 85b0c1e..97c95f0 100644 ---- a/src/pmgc/CMakeLists.txt -+++ b/src/pmgc/CMakeLists.txt -@@ -42,4 +42,4 @@ add_items( - mgfasd.h - ) - --add_sublibrary(pmgc) -+add_sublibrary(pmgc apbs_geoflow) diff --git a/sci-chemistry/apbs/files/apbs-1.4.1-python.patch b/sci-chemistry/apbs/files/apbs-1.4.1-python.patch deleted file mode 100644 index 5ad6613615f2..000000000000 --- a/sci-chemistry/apbs/files/apbs-1.4.1-python.patch +++ /dev/null @@ -1,122 +0,0 @@ - apbs/contrib/iapbs/src/apbs_driver.c | 6 +++--- - apbs/src/CMakeLists.txt | 1 + - apbs/tools/CMakeLists.txt | 2 +- - apbs/tools/python/CMakeLists.txt | 1 + - apbs/tools/python/apbslib.c | 4 ++-- - apbs/tools/python/apbslib.i | 4 ++-- - apbs/tools/python/setup.py | 16 ++++++++++++++++ - 7 files changed, 26 insertions(+), 8 deletions(-) - -diff --git a/contrib/iapbs/src/apbs_driver.c b/contrib/iapbs/src/apbs_driver.c -index c9e443b..e1ad67f 100644 ---- a/contrib/iapbs/src/apbs_driver.c -+++ b/contrib/iapbs/src/apbs_driver.c -@@ -595,7 +595,7 @@ int apbsdrv_( - printPBEPARM(pbeparm); - - /* Refine mesh */ -- if (!preRefineFE(i, nosh, feparm, fetk)) { -+ if (!preRefineFE(i, feparm, fetk)) { - Vnm_tprint( 2, "Error pre-refining mesh!\n"); - VJMPERR1(0); - } -@@ -609,7 +609,7 @@ int apbsdrv_( - Vnm_tprint(1, " Beginning solve-estimate-refine cycle:\n"); - for (isolve=0; isolve<feparm->maxsolve; isolve++) { - Vnm_tprint(1, " Solve #%d...\n", isolve); -- if (!solveFE(i, nosh, pbeparm, feparm, fetk)) { -+ if (!solveFE(i, pbeparm, feparm, fetk)) { - Vnm_tprint(2, "ERROR SOLVING EQUATION!\n"); - VJMPERR1(0); - } -@@ -622,7 +622,7 @@ int apbsdrv_( - /* We're not going to refine if we've hit the max number - * of solves */ - if (isolve < (feparm->maxsolve)-1) { -- if (!postRefineFE(i, nosh, feparm, fetk)) break; -+ if (!postRefineFE(i, feparm, fetk)) break; - } - bytesTotal = Vmem_bytesTotal(); - highWater = Vmem_highWaterTotal(); -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index 44d20fa..2577343 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -68,6 +68,7 @@ configure_file( - - if(ENABLE_iAPBS) - ADD_LIBRARY(apbs_routines routines.c routines.h) -+ target_link_libraries(apbs_routines apbs_mg apbs_fem) - INSTALL(TARGETS apbs_routines DESTINATION ${LIBRARY_INSTALL_PATH}) - INSTALL(FILES apbscfg.h DESTINATION ${HEADER_INSTALL_PATH}) - endif() -diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt -index 1982a3c..4acbe68 100644 ---- a/tools/CMakeLists.txt -+++ b/tools/CMakeLists.txt -@@ -4,5 +4,5 @@ add_subdirectory(mesh) - add_subdirectory(manip) - - if(ENABLE_PYTHON) -- add_subdirectory(manip) -+ add_subdirectory(python) - endif(ENABLE_PYTHON) -diff --git a/tools/python/CMakeLists.txt b/tools/python/CMakeLists.txt -new file mode 100644 -index 0000000..8b13789 ---- /dev/null -+++ b/tools/python/CMakeLists.txt -@@ -0,0 +1 @@ -+ -diff --git a/tools/python/apbslib.c b/tools/python/apbslib.c -index fef5cc8..feaaa2c 100644 ---- a/tools/python/apbslib.c -+++ b/tools/python/apbslib.c -@@ -2504,8 +2504,8 @@ static swig_module_info swig_module = {swig_types, 24, 0, 0, 0, 0}; - #include "maloc/maloc.h" - #include "apbscfg.h" - #include "routines.h" --#include "apbs/valist.h" --#include "apbs/vatom.h" -+#include "generic/valist.h" -+#include "generic/vatom.h" - - - #include <limits.h> -diff --git a/tools/python/apbslib.i b/tools/python/apbslib.i -index 17fe521..44d05ea 100644 ---- a/tools/python/apbslib.i -+++ b/tools/python/apbslib.i -@@ -15,8 +15,8 @@ Header files: - #include "maloc/maloc.h" - #include "apbscfg.h" - #include "routines.h" --#include "apbs/valist.h" --#include "apbs/vatom.h" -+#include "generic/valist.h" -+#include "generic/vatom.h" - %} - - /* -diff --git a/tools/python/setup.py b/tools/python/setup.py -new file mode 100644 -index 0000000..4a20198 ---- /dev/null -+++ b/tools/python/setup.py -@@ -0,0 +1,16 @@ -+from distutils.core import setup, Extension -+setup(name='apbs', -+ version='1.4.1', -+ package_dir={'apbs': '', 'vgrid': 'vgrid'}, -+ packages=['apbs', 'vgrid'], -+ py_modules=['apbslib', 'main', 'noinput'], -+ ext_modules=[ -+ Extension( -+ '_apbslib', -+ ['apbslib.i'], -+ swig_opts=['-module', 'apbslib', '-I../include'], -+ include_dirs=["../../src"], -+ libraries=["apbs_generic", "apbs_routines"] -+ ) -+ ], -+ ) diff --git a/sci-chemistry/apbs/metadata.xml b/sci-chemistry/apbs/metadata.xml deleted file mode 100644 index a33a5468d19c..000000000000 --- a/sci-chemistry/apbs/metadata.xml +++ /dev/null @@ -1,25 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <use> - <flag name="fetk">Include support for FeTK</flag> - <flag name="fast">APBS fast mode (experimental)</flag> - <flag name="iapbs">C/C++/Fortran interface</flag> - <flag name="tools">Install optional tools</flag> - </use> - <longdescription> -APBS is a software package for modeling biomolecular solvation through solution -of the Poisson-Boltzmann equation (PBE), one of the most popular continuum -models for describing electrostatic interactions between molecular solutes in -salty, aqueous media. Continuum electrostatics plays an important role in -several areas of biomolecular simulation - </longdescription> - <upstream> - <remote-id type="github">Electrostatics/apbs-pdb2pqr</remote-id> - <remote-id type="sourceforge">apbs</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-chemistry/eden/Manifest b/sci-chemistry/eden/Manifest deleted file mode 100644 index ef7017e4ec14..000000000000 --- a/sci-chemistry/eden/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST eden_V5.3.tar.gz 1139981 BLAKE2B 237f054accbba72fcde3a43716915a8037412a26aee861839c4a6e404276126a3955e6e0a3c76078b2253658f3ab9bcf8ad628bba059421c5171d0394c41052b SHA512 c59d08004bdb72ef39fe205aef546fbcff9c57ee42942c0391052de9c501c7793ed3bd280569020c2b9ec6133a87362d184a2012b61c6be18b5f6ba9b59716c5 diff --git a/sci-chemistry/eden/eden-5.3-r2.ebuild b/sci-chemistry/eden/eden-5.3-r2.ebuild deleted file mode 100644 index 8bf667224ba8..000000000000 --- a/sci-chemistry/eden/eden-5.3-r2.ebuild +++ /dev/null @@ -1,88 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit eutils multilib python-r1 toolchain-funcs - -MY_P="${PN}_V${PV}" - -DESCRIPTION="A crystallographic real-space electron-density refinement & optimization program" -HOMEPAGE="http://www.gromacs.org/pipermail/eden-users/" -SRC_URI="mirror://gentoo/${MY_P}.tar.gz" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="double-precision" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - sci-libs/fftw:2.1 - sci-libs/gsl - ${PYTHON_DEPS}" -DEPEND="${RDEPEND} - virtual/pkgconfig" - -S="${WORKDIR}/${PN}" - -SRC="${S}/source" - -pkg_setup() { - export EDENHOME="${EPREFIX}/usr/$(get_libdir)/${PN}" -} - -src_prepare() { - epatch \ - "${FILESDIR}"/${PV}-makefile-fixes.patch \ - "${FILESDIR}"/${P}-impl-dec.patch \ - "${FILESDIR}"/${P}-format-security.patch - - sed -i \ - -e "s:^\(FFTW.*=\).*:\1 ${EPREFIX}/usr:g" \ - -e "s:^\(LIB.*=.*\$(FFTW)/\).*:\1$(get_libdir):g" \ - -e "s:^\(BIN.*=\).*:\1 ${D}usr/bin:g" \ - -e "s:^\(CFLAGS.*=\).*:\1 ${CFLAGS}:g" \ - -e "s:-lgsl -lgslcblas:$($(tc-getPKG_CONFIG) --libs gsl):g" \ - ${SRC}/Makefile || die - - if ! use double-precision; then - sed -i -e "s:^\(DOUBLESWITCH.*=\).*:\1 OFF:g" ${SRC}/Makefile || die - EDEN_EXE="s${PN}" - else - EDEN_EXE="d${PN}" - fi -} - -src_compile() { - emake CC=$(tc-getCC) -C ${SRC} -} - -src_install() { - emake -C ${SRC} install - - python_foreach_impl python_newscript python/${PN}.py i${PN} - python_foreach_impl python_domodule python/FileListDialog.py - - rm python/*py || die - insinto ${EDENHOME}/python - doins python/* - - insinto ${EDENHOME}/help - doins help/* - - insinto ${EDENHOME}/tools - doins tools/* - - dodoc manual/UserManual.pdf - - cat >> "${T}"/60${PN} <<- EOF - EDENHOME="${EDENHOME}" - EOF - - doenvd "${T}"/60${PN} - - dosym ${EDEN_EXE} /usr/bin/${PN} -} diff --git a/sci-chemistry/eden/files/5.3-makefile-fixes.patch b/sci-chemistry/eden/files/5.3-makefile-fixes.patch deleted file mode 100644 index 632358341784..000000000000 --- a/sci-chemistry/eden/files/5.3-makefile-fixes.patch +++ /dev/null @@ -1,60 +0,0 @@ - source/Makefile | 17 ++++++++++------- - 1 files changed, 10 insertions(+), 7 deletions(-) - -diff --git a/source/Makefile b/source/Makefile -index 46d89cc..aa751c7 100644 ---- a/source/Makefile -+++ b/source/Makefile -@@ -78,8 +78,10 @@ CFLAGS = -Wall -pipe -g3 - #CFLAGS = -Wall -pipe -marchi686 -pedantic -gdwarf-2 -g3 - #CFLAGS = -Wall -O3 -march=i686 - ifneq ($(FFTW),/usr/local) -+ifneq ($(FFTW),/usr) - CFLAGS += -I$(INC) - endif -+endif - - # NOTE: - # DOUBLESWITCH = ON for double precision; -@@ -91,15 +93,15 @@ endif - DOUBLESWITCH = ON - - ifeq ($(DOUBLESWITCH),ON) --LDFLAGS = -L$(LIB) -ldfftw -lm -+LIBS = -L$(LIB) -ldfftw -lm - CFLAGS += -DDOUBLE - TARGET = deden - else --LDFLAGS = -L$(LIB) -lsfftw -lm -+LIBS = -L$(LIB) -lsfftw -lm - TARGET = seden - endif - --LDFLAGS += -g -lgsl -lgslcblas -+LIBS += -lgsl -lgslcblas - - # GSL_PREFIX:= /sw/lib - # LDFLAGS += -l$(GSL_PREFIX)/libgsl.a -l$(GSL_PREFIX)/libgslcblas.a -@@ -120,17 +122,18 @@ OBJ = addmaps.o apodfc.o apodfo.o back.o cadhkl.o \ - all: eden fbyteswap - - eden: eden.o $(OBJ) -- $(CC) $^ $(LDFLAGS) -o $@ -+ $(CC) $(LDFLAGS) -o $@ $^ $(LIBS) - - fbyteswap: fbyteswap.c -- $(CC) -o $@ $^ -+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $^ $(LIBS) - - install: all -+ mkdir -p $(BIN) - mv fbyteswap $(BIN) - mv eden $(BIN)/$(TARGET) - chmod 751 $(BIN)/$(TARGET) -- chmod +x mkeden.csh -- ./mkeden.csh $(BIN) $(BIN)/$(TARGET) -+# chmod +x mkeden.csh -+# ./mkeden.csh $(BIN) $(BIN)/$(TARGET) - - dist: clean - cd ../..; tar -cvf eden_$(VERSION).tar --exclude CVS --exclude \#\*\# --exclude \*~ --exclude Misc --exclude .\* eden; gzip -f eden_$(VERSION).tar diff --git a/sci-chemistry/eden/files/eden-5.3-format-security.patch b/sci-chemistry/eden/files/eden-5.3-format-security.patch deleted file mode 100644 index 04b5ecfddebb..000000000000 --- a/sci-chemistry/eden/files/eden-5.3-format-security.patch +++ /dev/null @@ -1,96 +0,0 @@ - source/back.c | 2 +- - source/concosts.c | 4 ++-- - source/count.c | 4 ++-- - source/eden.c | 2 +- - source/util.c | 4 ++-- - 5 files changed, 8 insertions(+), 8 deletions(-) - -diff --git a/source/back.c b/source/back.c -index fd517b9..185a02b 100644 ---- a/source/back.c -+++ b/source/back.c -@@ -112,7 +112,7 @@ void back_main(int argc, char *argv[]) - ballpark(caller) ; - - if (argc > optind+2) -- sprintf(sf_filename, argv[optind+2]) ; -+ sprintf(sf_filename, "%s", argv[optind+2]) ; - - /********************************************* - Pull off prefix defining whereabouts of input -diff --git a/source/concosts.c b/source/concosts.c -index d62d2e3..590f073 100644 ---- a/source/concosts.c -+++ b/source/concosts.c -@@ -452,7 +452,7 @@ void prepare_singlets(char *filename) - sprintf(message, - "s=%d, p=%d, n=%d, phase=%g, old phase=%g, delta=%g\n", - s, p, n, phase, *(checks+n), phase-*(checks+n)) ; -- fprintf(fp_log, message) ; -+ fprintf(fp_log, "%s", message) ; - } - } - /*********************************************** -@@ -556,7 +556,7 @@ void prepare_triplets(char *filename) - sprintf(message, - "Triplet (%d %d %d) from input (%d %d %d) corresponds to point w/o fobs info!\n", - newh, newk, newl, t_h[q], t_k[q], t_l[q]) ; -- fprintf(fp_log, message) ; -+ fprintf(fp_log, "%s", message) ; - legal_triplet = FALSE ; - } - } -diff --git a/source/count.c b/source/count.c -index c3bc390..ca13008 100644 ---- a/source/count.c -+++ b/source/count.c -@@ -460,12 +460,12 @@ void print_el_count(char *filename, - } - - sprintf(message, "\nTotal no. of electrons is %g\n", totnump*volvox) ; -- fprintf(fp, message) ; -+ fprintf(fp, "%s", message) ; - printTwice(message) ; - - sprintf(message, "Count of all remaining electrons: %g %g %g\n", - remainder0*volvox, remainder1*volvox, remainder2*volvox) ; -- fprintf(fp, message) ; -+ fprintf(fp, "%s", message) ; - printTwice(message) ; - - fclose(fp) ; -diff --git a/source/eden.c b/source/eden.c -index dea3246..5a9b389 100644 ---- a/source/eden.c -+++ b/source/eden.c -@@ -319,7 +319,7 @@ int main(int argc, char *argv[]) - - get_unique_logname() ; - -- sprintf(command_line, argv[0]) ; -+ sprintf(command_line, "%s", argv[0]) ; - - for (k = 1; k < argc; k++) { - strcat(command_line, " ") ; -diff --git a/source/util.c b/source/util.c -index 6fff179..41c624c 100644 ---- a/source/util.c -+++ b/source/util.c -@@ -266,7 +266,7 @@ void printTwice(char *mess) /* send info to terminal (stdout) and to log */ - - void prompt(char *mess) /* Send message to user, await reply */ - { -- fprintf(stdout, mess) ; -+ fprintf(stdout, "%s", mess) ; - - while (fgets(terminp, MAXSTRING, stdin) != NULL) { - if ((int)strlen(terminp) > 0) -@@ -722,7 +722,7 @@ void start_record() - int k ; - - rec_length = k = sprintf(record, "\n") ; -- rec_length += sprintf(record+k, timestamp()) ; -+ rec_length += sprintf(record+k, "%s", timestamp()) ; - k = rec_length ; - - if ((cwd = getcwd(NULL, 120)) == NULL) diff --git a/sci-chemistry/eden/files/eden-5.3-impl-dec.patch b/sci-chemistry/eden/files/eden-5.3-impl-dec.patch deleted file mode 100644 index af67508d090e..000000000000 --- a/sci-chemistry/eden/files/eden-5.3-impl-dec.patch +++ /dev/null @@ -1,28 +0,0 @@ - source/fbyteswap.c | 1 + - source/util.c | 1 + - 2 files changed, 2 insertions(+), 0 deletions(-) - -diff --git a/source/fbyteswap.c b/source/fbyteswap.c -index 83015b9..c9033c3 100644 ---- a/source/fbyteswap.c -+++ b/source/fbyteswap.c -@@ -39,6 +39,7 @@ and shall not be used for advertising or product endorsement purposes. - - #include <stdio.h> - #include <fcntl.h> -+#include <unistd.h> - #include <sys/stat.h> - #include <sys/types.h> - void byteswap(); -diff --git a/source/util.c b/source/util.c -index 6fff179..ca7a957 100644 ---- a/source/util.c -+++ b/source/util.c -@@ -89,6 +89,7 @@ and shall not be used for advertising or product endorsement purposes. - - *******************************************************************************/ - #include <sys/time.h> /* ... for picking up date & time */ -+#include <time.h> - #include <signal.h> /* ... for capturing kill */ - #include "util.h" - diff --git a/sci-chemistry/eden/files/makefile-fixes.patch b/sci-chemistry/eden/files/makefile-fixes.patch deleted file mode 100644 index 4cfff3f515df..000000000000 --- a/sci-chemistry/eden/files/makefile-fixes.patch +++ /dev/null @@ -1,25 +0,0 @@ -diff -ur eden.orig/source/Makefile eden/source/Makefile ---- eden.orig/source/Makefile 2004-10-18 10:40:03.000000000 -0700 -+++ eden/source/Makefile 2005-12-15 22:32:45.000000000 -0800 -@@ -78,8 +78,10 @@ - #CFLAGS = -Wall -pipe -marchi686 -pedantic -gdwarf-2 -g3 - #CFLAGS = -Wall -O3 -march=i686 - ifneq ($(FFTW),/usr/local) -+ifneq ($(FFTW),/usr) - CFLAGS += -I$(INC) - endif -+endif - - # NOTE: - # DOUBLESWITCH = ON for double precision; -@@ -129,8 +131,8 @@ - mv fbyteswap $(BIN) - mv eden $(BIN)/$(TARGET) - chmod 751 $(BIN)/$(TARGET) -- chmod +x mkeden.csh -- ./mkeden.csh $(BIN) $(BIN)/$(TARGET) -+# chmod +x mkeden.csh -+# ./mkeden.csh $(BIN) $(BIN)/$(TARGET) - - dist: clean - cd ../..; tar -cvf eden_$(VERSION).tar --exclude CVS --exclude \#\*\# --exclude \*~ --exclude Misc --exclude .\* eden; gzip -f eden_$(VERSION).tar diff --git a/sci-chemistry/eden/metadata.xml b/sci-chemistry/eden/metadata.xml deleted file mode 100644 index 6113635247f3..000000000000 --- a/sci-chemistry/eden/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <use> - <flag name="double-precision">More precise calculations at the expense of - speed</flag> - </use> -</pkgmetadata> diff --git a/sci-chemistry/p3d/Manifest b/sci-chemistry/p3d/Manifest deleted file mode 100644 index 93d8b80b2f94..000000000000 --- a/sci-chemistry/p3d/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST p3d-0.4.3.tar.gz 7213577 BLAKE2B b614957be16ede7567bd6412d183b3cb79638a5033672afd725cafaf393e306d5d227e1bca444ea17d60a3cd3bb5d3b2c910f2bfc68a118d3bffcd29944b4c29 SHA512 b4cf472b849ece96fe0b2b7f633c496fe3d12bf8cb82a2af10180ce5c27c5465dd0c16cb912d22c56c933b68c06e7de28c0c640da29eaa6bc6f95009bf10277f diff --git a/sci-chemistry/p3d/metadata.xml b/sci-chemistry/p3d/metadata.xml deleted file mode 100644 index bd505aa96a4e..000000000000 --- a/sci-chemistry/p3d/metadata.xml +++ /dev/null @@ -1,21 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> -p3d was developed in order to offer a Python module that is powerful and fast, -yet intuitive to use. The simplicity of p3d is due to the usage of object -oriented programming (i.e. atoms are treated as vectors), the implementation -of a query parser that translates queries readable by humans into a combination -of algebra set operations the fact that no additional Python packages are -necessary. The speed is due to the usage of a binary space partitioning (BSP) -tree which allows very fast queries in 3D (Henry et al. 1980). The additional -synergy is obtained by the flexible combination of both speed and complexity in -the queries to the structural data. The combination of these factors makes p3d -the optimal module to rapidly develop new and powerful bioinformatic tools that -follow the Python philosophy of making the source code readable. -</longdescription> -</pkgmetadata> diff --git a/sci-chemistry/p3d/p3d-0.4.3-r1.ebuild b/sci-chemistry/p3d/p3d-0.4.3-r1.ebuild deleted file mode 100644 index 04d5f49cf7b2..000000000000 --- a/sci-chemistry/p3d/p3d-0.4.3-r1.ebuild +++ /dev/null @@ -1,29 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 vcs-snapshot versionator - -MY_P="${PN}-$(replace_version_separator 3 -)" -GITHUB_ID="gb8b9a75" - -DESCRIPTION="Python module for structural bioinformatics" -HOMEPAGE="http://p3d.fufezan.net/" -SRC_URI="https://nodeload.github.com/fu/${PN}/tarball/${PV} -> ${P}.tar.gz" - -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -LICENSE="GPL-3" -IUSE="examples" - -src_install() { - distutils-r1_src_install - - if use examples; then - insinto /usr/share/${PN} - doins -r pdbs exampleScripts - fi -} diff --git a/sci-chemistry/p3d/p3d-9999.ebuild b/sci-chemistry/p3d/p3d-9999.ebuild deleted file mode 100644 index 5dd3fdc9a942..000000000000 --- a/sci-chemistry/p3d/p3d-9999.ebuild +++ /dev/null @@ -1,27 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) - -inherit distutils-r1 git-r3 versionator - -DESCRIPTION="Python module for structural bioinformatics" -HOMEPAGE="http://p3d.fufezan.net/" -SRC_URI="" -EGIT_REPO_URI="https://github.com/fu/p3d.git" - -SLOT="0" -KEYWORDS="" -LICENSE="GPL-3" -IUSE="examples" - -src_install() { - distutils-r1_src_install - - if use examples; then - insinto /usr/share/${PN} - doins -r pdbs exampleScripts - fi -} diff --git a/sci-chemistry/pdb-tools/Manifest b/sci-chemistry/pdb-tools/Manifest deleted file mode 100644 index f507aec00c53..000000000000 --- a/sci-chemistry/pdb-tools/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pdbTools_0.2.1.tar.gz 103835 BLAKE2B ad4b5c8d6eb000c79a6d2797519b99027350fa34f6d543f6302f1a9edbe3497afe1a7b5c5c0e7243081cc709d9f1c37da5fc31605a0a225413851ce7288f64c9 SHA512 9c43c10e8739f8a34dbb1a3bba710cc727f7d8392ff979681371bd4460c67203253fb01852438eb93b214c4a009789608d200ca551f30399652fb76d702cf724 diff --git a/sci-chemistry/pdb-tools/metadata.xml b/sci-chemistry/pdb-tools/metadata.xml deleted file mode 100644 index 25095bc4b42e..000000000000 --- a/sci-chemistry/pdb-tools/metadata.xml +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <upstream> - <remote-id type="google-code">pdb-tools</remote-id> - <remote-id type="github">harmslab/pdbtools</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild deleted file mode 100644 index 090b7c041dfe..000000000000 --- a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r1.ebuild +++ /dev/null @@ -1,79 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit fortran-2 python-single-r1 toolchain-funcs - -MY_PN="pdbTools" - -DESCRIPTION="Tools for manipulating and calculations on wwPDB macromolecule structure files" -HOMEPAGE="https://github.com/harmslab/pdbtools" -SRC_URI="https://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS}" -DEPEND="${RDEPEND}" - -S="${WORKDIR}"/${MY_PN}_${PV} - -pkg_setup() { - python-single-r1_pkg_setup - fortran-2_pkg_setup -} - -src_prepare() { - sed \ - -e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \ - -i pdb_sasa.py || die - sed \ - -e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \ - -i pdb_satk.py || die - sed \ - -e 's:> %:>%:g' \ - -i pdb_seq.py || die -} - -src_compile() { - mkdir bin - cd satk - for i in *.f; do - einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" - $(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die - $(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die - sed \ - -e "s:${i/.f}.out:${i/.f}:g" \ - -i ../pdb_satk.py || die - done -} - -src_install() { - local script - insinto /usr/share/${PN} - doins -r pdb_data/peptides - rm -rf pdb_data/peptides || die - - python_domodule helper pdb_data - - python_moduleinto ${PN/-/_} - python_domodule *.py - - for i in pdb_*.py; do - cat > ${i/.py} <<- EOF - #!${EPREFIX}/bin/bash - ${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@ - EOF - dobin ${i/.py} - done - - dobin bin/* - dodoc README -} diff --git a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild b/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild deleted file mode 100644 index a476a801611a..000000000000 --- a/sci-chemistry/pdb-tools/pdb-tools-0.2.1-r2.ebuild +++ /dev/null @@ -1,83 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit fortran-2 python-single-r1 toolchain-funcs - -MY_PN="pdbTools" - -DESCRIPTION="Tools for manipulating and calculations on wwPDB macromolecule structure files" -HOMEPAGE="https://github.com/harmslab/pdbtools" -SRC_URI="https://${PN}.googlecode.com/files/${MY_PN}_${PV}.tar.gz" - -SLOT="0" -LICENSE="GPL-3" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS}" -DEPEND="${RDEPEND}" - -S="${WORKDIR}"/${MY_PN}_${PV} - -pkg_setup() { - python-single-r1_pkg_setup - fortran-2_pkg_setup -} - -src_prepare() { - sed \ - -e "s:script_dir,\"pdb_data\":\"${EPREFIX}/usr/share/${PN}\",\"pdb_data\":g" \ - -i pdb_sasa.py || die - sed \ - -e "/satk_path =/s:^.*$:satk_path = \"${EPREFIX}/usr/bin\":g" \ - -i pdb_satk.py || die - sed \ - -e 's:> %:>%:g' \ - -i pdb_seq.py || die - - sed \ - -e "/import/s:helper:${PN/-/_}.helper:g" \ - -i *.py || die -} - -src_compile() { - mkdir bin - cd satk - for i in *.f; do - einfo "$(tc-getFC) ${FFLAGS} ${LDFLAGS} ${i} -o ${i/.f}" - $(tc-getFC) ${FFLAGS} -c ${i} -o ${i/.f/.o} || die - $(tc-getFC) ${LDFLAGS} -o ../bin/${i/.f} ${i/.f/.o} || die - sed \ - -e "s:${i/.f}.out:${i/.f}:g" \ - -i ../pdb_satk.py || die - done -} - -src_install() { - local script - insinto /usr/share/${PN} - doins -r pdb_data/peptides - rm -rf pdb_data/peptides || die - - python_domodule pdb_data - - python_moduleinto ${PN/-/_} - python_domodule helper *.py - - for i in pdb_*.py; do - cat > ${i/.py} <<- EOF - #!${EPREFIX}/bin/bash - ${PYTHON} -O "$(python_get_sitedir)/${PN/-/_}/${i}" \$@ - EOF - dobin ${i/.py} - done - - dobin bin/* - dodoc README -} diff --git a/sci-chemistry/pdb2pqr/Manifest b/sci-chemistry/pdb2pqr/Manifest deleted file mode 100644 index 0663d5136267..000000000000 --- a/sci-chemistry/pdb2pqr/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pdb2pqr-src-1.9.0.tar.gz 9051969 BLAKE2B bacb2c65d319fb918a7a15b772c250398ffa991a93ee731ec15c8ae907304daf57282bf83c24f84d11945349a7f93f6f934575c117d4ce24d6530f14e60f3730 SHA512 7f3f191cca9879a0e166e82700c706f8c99bb66558a218e54845f10c3324b6c45d413da80b0782d96a8d56df1463262609db075aba3768db3942cb928ee7b98f diff --git a/sci-chemistry/pdb2pqr/files/pdb2pka b/sci-chemistry/pdb2pqr/files/pdb2pka deleted file mode 100644 index 2406b0c4773f..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pka +++ /dev/null @@ -1,13 +0,0 @@ -#!/usr/bin/env python - -import subprocess -import site -import sys -import os - -sitepackages = site.getsitepackages()[0] - -_cmd=[os.path.join(sitepackages, "pdb2pqr", "pdb2pka", "pka.py")] -_cmd.extend(sys.argv[1:]) - -subprocess.call(_cmd, stdout=sys.stdout, stderr=sys.stderr) diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr b/sci-chemistry/pdb2pqr/files/pdb2pqr deleted file mode 100644 index 8c0635aea94e..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr +++ /dev/null @@ -1,13 +0,0 @@ -#!/usr/bin/env python - -import subprocess -import site -import sys -import os - -sitepackages = site.getsitepackages()[0] - -_cmd=[os.path.join(sitepackages, "pdb2pqr", "pdb2pqr.py")] -_cmd.extend(sys.argv[1:]) - -subprocess.call(_cmd, stdout=sys.stdout, stderr=sys.stderr) diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch deleted file mode 100644 index fac32b233e6b..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-flags.patch +++ /dev/null @@ -1,45 +0,0 @@ - pdb2pka/SConscript | 9 ++++++++- - pdb2pka/substruct/SConscript | 6 ++++++ - 2 files changed, 14 insertions(+), 1 deletion(-) - -diff --git a/pdb2pka/SConscript b/pdb2pka/SConscript -index 583cdc5..6c30011 100644 ---- a/pdb2pka/SConscript -+++ b/pdb2pka/SConscript -@@ -1,4 +1,11 @@ - Import('env')
-+import os
-+
-+env['CCFLAGS'].extend(os.environ['CXXFLAGS'].split())
-+env['LINKFLAGS'].extend(os.environ['LDFLAGS'].split())
-+env['CXX'] = os.environ['CXX']
-+env['LINK'] = os.environ['CXX']
-+
-
- if env['REBUILD_SWIG']:
- pyc = env.LoadableModule('_pMC_mult', ['pMC_mult.cpp', 'pMC_mult.i'])
-@@ -9,4 +16,4 @@ Default(pyc) -
- algorithms_module = SConscript('substruct/SConscript')
-
--Return('pyc algorithms_module') -\ No newline at end of file -+Return('pyc algorithms_module')
-diff --git a/pdb2pka/substruct/SConscript b/pdb2pka/substruct/SConscript -index 7dbcdb0..56fb577 100644 ---- a/pdb2pka/substruct/SConscript -+++ b/pdb2pka/substruct/SConscript -@@ -1,7 +1,13 @@ - import distutils
- import numpy
-+import os
- Import('env')
-
-+env['CCFLAGS'].extend(os.environ['CXXFLAGS'].split())
-+env['LINKFLAGS'].extend(os.environ['LDFLAGS'].split())
-+env['CXX'] = os.environ['CXX']
-+env['LINK'] = os.environ['CXX']
-+
- env.Append(CPPPATH=[distutils.sysconfig.get_python_inc(), numpy.get_include()])
-
- algorithms_pyc = env.LoadableModule('Algorithms', ['Algorithms.cpp'])
diff --git a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch b/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch deleted file mode 100644 index 2695b013c66a..000000000000 --- a/sci-chemistry/pdb2pqr/files/pdb2pqr-1.9.0-install-py.patch +++ /dev/null @@ -1,15 +0,0 @@ - SConscript-install.py | 1 + - 1 file changed, 1 insertion(+) - -diff --git a/SConscript-install.py b/SConscript-install.py -index e2f9f09..1fdf1a8 100644 ---- a/SConscript-install.py -+++ b/SConscript-install.py -@@ -41,6 +41,7 @@ def installFile(file_name, build_target='install'): - if GetOption("clean"):
- env.Default(result)
- Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), result))
-+ Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), target))
- else:
- Alias(build_target, env.Install(env['PREFIX']+dirname(file_name), target))
-
diff --git a/sci-chemistry/pdb2pqr/metadata.xml b/sci-chemistry/pdb2pqr/metadata.xml deleted file mode 100644 index 36fd8c04ac52..000000000000 --- a/sci-chemistry/pdb2pqr/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <use> - <flag name="opal">Add web interface via opal</flag> - <flag name="pdb2pka">Install experimental pdb2pka interface</flag> - </use> - <upstream> - <remote-id type="github">Electrostatics/apbs-pdb2pqr</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r3.ebuild b/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r3.ebuild deleted file mode 100644 index 179e6448d605..000000000000 --- a/sci-chemistry/pdb2pqr/pdb2pqr-1.9.0-r3.ebuild +++ /dev/null @@ -1,114 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit scons-utils fortran-2 flag-o-matic python-single-r1 toolchain-funcs - -DESCRIPTION="Automated pipeline for performing Poisson-Boltzmann electrostatics calculations" -HOMEPAGE="https://www.poissonboltzmann.org/" -SRC_URI="https://github.com/Electrostatics/apbs-${PN}/releases/download/${P}/${PN}-src-${PV}.tar.gz" - -SLOT="0" -LICENSE="BSD" -IUSE="doc examples opal +pdb2pka" -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - $(python_gen_cond_dep ' - || ( - dev-python/numpy-python2[${PYTHON_MULTI_USEDEP}] - dev-python/numpy[${PYTHON_MULTI_USEDEP}] - ) - sci-chemistry/openbabel-python[${PYTHON_MULTI_USEDEP}] - opal? ( dev-python/zsi[${PYTHON_MULTI_USEDEP}] ) - ') - pdb2pka? ( sci-chemistry/apbs[${PYTHON_SINGLE_USEDEP},-mpi] )" -DEPEND="${RDEPEND} - dev-lang/swig:0" - -PATCHES=( - "${FILESDIR}"/${P}-flags.patch - "${FILESDIR}"/${P}-install-py.patch -) - -pkg_setup() { - if [[ -z ${MAXATOMS} ]]; then - einfo "If you like to have support for more then 10000 atoms," - einfo "export MAXATOMS=\"your value\"" - export MAXATOMS=10000 - else - einfo "Allow usage of ${MAXATOMS} during calculations" - fi - fortran-2_pkg_setup - python-single-r1_pkg_setup -} - -src_prepare() { - find -type f \( -name "*\.pyc" -o -name "*\.pyo" \) -delete || die - - export CXXFLAGS="${CXXFLAGS}" - export LDFLAGS="${LDFLAGS}" - - epatch "${PATCHES[@]}" - tc-export CXX - rm -rf scons || die -} - -src_configure() { - cat > build_config.py <<- EOF - PREFIX="${D}/$(python_get_sitedir)/${PN}" - #URL="http://<COMPUTER NAME>/pdb2pqr/" - APBS="${EPREFIX}/usr/bin/apbs" - #OPAL="http://nbcr-222.ucsd.edu/opal2/services/pdb2pqr_1.8" - #APBS_OPAL="http://nbcr-222.ucsd.edu/opal2/services/apbs_1.3" - MAX_ATOMS=${MAXATOMS} - BUILD_PDB2PKA=$(usex pdb2pka True False) - REBUILD_SWIG=True - EOF -} - -src_compile() { - escons -} - -src_test() { - local myesconsargs=( -j1 ) - escons test - escons advtest - escons complete-test -} - -src_install() { - dodir /usr/share/doc/${PF}/html - local lib - - escons install - - find "${D}$(python_get_sitedir)"/${PN}/{jmol,examples,doc,contrib} -delete || die - - python_doscript "${FILESDIR}"/{${PN},pdb2pka} - - for lib in apbslib.py{,c,o}; do - dosym ../../apbs/${lib} $(python_get_sitedir)/${PN}/pdb2pka/${lib} - done - dosym ../../_apbslib.so $(python_get_sitedir)/${PN}/pdb2pka/_apbslib.so - python_optimize - - if use doc; then - pushd doc > /dev/null - docinto html - dodoc -r *.html images pydoc - popd > /dev/null - fi - - use examples && \ - insinto /usr/share/${PN}/ && \ - doins -r examples - - dodoc *md NEWS -} diff --git a/sci-chemistry/prodecomp/Manifest b/sci-chemistry/prodecomp/Manifest deleted file mode 100644 index 57d019e2f920..000000000000 --- a/sci-chemistry/prodecomp/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST prodecomp-3.0.tar.bz2 18377446 BLAKE2B c6b4acf20a76029fc34eaea7a0adf1a04fb727b2e246fbcad27e2fa2bea606b2e712fb986fdd3e534534b32a22acae58a00bc2a3c6bde893d5befe91696523d3 SHA512 8d23f174e125d4c7776432a37b063d2f39af8497050bd7f7ff358c67d509b1eef2c2865596efae632855fd583fb52c233b67d0e667c6c2a03ba6f5a2f2ac9b0d diff --git a/sci-chemistry/prodecomp/metadata.xml b/sci-chemistry/prodecomp/metadata.xml deleted file mode 100644 index 168ce755cbc8..000000000000 --- a/sci-chemistry/prodecomp/metadata.xml +++ /dev/null @@ -1,18 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> - <longdescription> - PRODECOMP (PROjection DECOMPosition) is a software tool for - decomposition of 2D projections of high-dimensional NMR spectra to a set - of components (defined in turn by one-dimensional "shapes"). - Simultaneous analysis of projections from one or several - high-dimensional experiments provide unambigous chemical shifts for - large spin systems. The latter can be used for backbone and side-chain - assignments as well as structural studies of proteins - (Malmodin and Billeter 2005; 2006; Staykova et al. 2008a,b). - </longdescription> -</pkgmetadata> diff --git a/sci-chemistry/prodecomp/prodecomp-3.0-r3.ebuild b/sci-chemistry/prodecomp/prodecomp-3.0-r3.ebuild deleted file mode 100644 index 65683c21b0fa..000000000000 --- a/sci-chemistry/prodecomp/prodecomp-3.0-r3.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit python-single-r1 - -DESCRIPTION="Decomposition-based analysis of NMR projections" -HOMEPAGE="http://www.lundberg.gu.se/nmr/software.php?program=PRODECOMP" -SRC_URI="mirror://gentoo/${P}.tar.bz2" - -SLOT="0" -LICENSE="GPL-2" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS}" -RDEPEND="${DEPEND} - $(python_gen_cond_dep ' - || ( - sci-libs/scipy-python2[${PYTHON_MULTI_USEDEP}] - sci-libs/scipy[${PYTHON_MULTI_USEDEP}] - ) - ')" - -S="${WORKDIR}"/NMRProjAnalys - -src_install() { - python_export - if use examples; then - insinto /usr/share/${PN} - doins -r ExampleData Results - fi - - dodoc ProjTools/Manual.pdf - rm -rf ProjTools/Manual.pdf ProdecompOutput || die - - python_moduleinto ${PN} - python_domodule ProjTools/. - python_optimize - - cat >> "${T}"/${PN} <<- EOF - #!/bin/bash - ${PYTHON} -O $(python_get_sitedir)/${PN}/ProjAnalys.py \$@ - EOF - dobin "${T}"/${PN} - - dosym ../../../../share/doc/${PF}/Manual.pdf "${PYTHON_SITEDIR##${EPREFIX}}"/${PN}/Manual.pdf -} diff --git a/sci-chemistry/pymol-plugins-caver/Manifest b/sci-chemistry/pymol-plugins-caver/Manifest deleted file mode 100644 index 4d7abe5d823c..000000000000 --- a/sci-chemistry/pymol-plugins-caver/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST Caver2_1_2_pymol_plugin.zip 5698331 BLAKE2B e1accfaea6faf1e8c545b88c965228ccb62710d4015ff681506971feba6bd18a4a8b0b6e6caf621c99830ba529a6ec17873cdd3d5e52ad6dc6f67d9457e4eb87 SHA512 9d28e059bb20f30cf6a0d25ed2eb080dcf9dbb753e9d4578d95e293b31c5cf5fe23d5177dccdb79c192ab3e65bb484b6eb22b26c267637b125404f871e01a52c diff --git a/sci-chemistry/pymol-plugins-caver/metadata.xml b/sci-chemistry/pymol-plugins-caver/metadata.xml deleted file mode 100644 index 8937bad0b175..000000000000 --- a/sci-chemistry/pymol-plugins-caver/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild b/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild deleted file mode 100644 index e189f885dcc5..000000000000 --- a/sci-chemistry/pymol-plugins-caver/pymol-plugins-caver-2.1.2.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2019 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit multilib python-r1 eutils versionator java-utils-2 - -MY_PV="$(replace_all_version_separators _)" -MY_P="Caver${MY_PV}_pymol_plugin" - -DESCRIPTION="Calculation of pathways of proteins from buried cavities to outside solvent" -HOMEPAGE="http://loschmidt.chemi.muni.cz/caver/" -SRC_URI="${MY_P}.zip" - -LICENSE="CAVER" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - >=virtual/jre-1.6 - sci-chemistry/pymol[${PYTHON_USEDEP}] - ${PYTHON_DEPS}" -DEPEND="app-arch/unzip - ${PYTHON_DEPS}" - -RESTRICT="bindist fetch" - -S="${WORKDIR}/${MY_P}"/linux_mac - -pkg_nofetch() { - elog "Download ${A}" - elog "from ${HOMEPAGE}. This requires registration." - elog "Place tarballs into your DISTDIR directory." -} - -src_install() { - java-pkg_dojar Caver${MY_PV}/*.jar - - java-pkg_jarinto /usr/share/${PN}/lib/lib/ - java-pkg_dojar Caver${MY_PV}/lib/*.jar - - installation() { - sed \ - -e "s:directory/where/jar/with/plugin/is/located:${EPREFIX}/usr/share/${PN}/lib/:g" \ - -i Caver${MY_PV}.py || die - - python_moduleinto pmg_tk/startup/ - python_domodule Caver${MY_PV}.py - python_optimize - } - python_foreach_impl installation -} diff --git a/sci-chemistry/pymol-plugins-dssp/Manifest b/sci-chemistry/pymol-plugins-dssp/Manifest deleted file mode 100644 index 672421ffa008..000000000000 --- a/sci-chemistry/pymol-plugins-dssp/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pymol-plugins-dssp-110430.py.xz 6836 BLAKE2B d8a58d1ad85aaa45acdcac40d022bac8035baf9c95c05e2cd6abb1dd82f1cd390515e04b4c65ff96902655a366ca2e4eab8e86060dffb27ea146298f827fbd7c SHA512 521e0a32ca6d2c8c21c690815b0654bb44303bd7fb9a1eb76227030b2ad7311fadb0d748e49b8bbc16cd5e69acba375b5353de7bffef1ff69686e62021fe64f4 diff --git a/sci-chemistry/pymol-plugins-dssp/metadata.xml b/sci-chemistry/pymol-plugins-dssp/metadata.xml deleted file mode 100644 index 8937bad0b175..000000000000 --- a/sci-chemistry/pymol-plugins-dssp/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild b/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild deleted file mode 100644 index 11269a75591f..000000000000 --- a/sci-chemistry/pymol-plugins-dssp/pymol-plugins-dssp-110430-r1.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-r1 - -DESCRIPTION="DSSP Plugin for PyMOL" -HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/dssp_pymol/dssp_pymol.html" -SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.py.xz" - -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -LICENSE="BSD pymol" -IUSE="" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -DEPEND="${PYTHON_DEPS}" -RDEPEND="${DEPEND} - sci-chemistry/dssp - sci-biology/stride - sci-chemistry/pymol[${PYTHON_USEDEP}]" - -S="${WORKDIR}" - -src_prepare() { - sed \ - -e "s:GENTOO_DSSP:${EPREFIX}/usr/bin/dssp:g" \ - -e "s:GENTOO_STRIDE:${EPREFIX}/usr/bin/stride:g" \ - -i ${P}.py || die -} - -src_install() { - python_moduleinto pmg_tk/startup - python_foreach_impl python_domodule ${P}.py - python_foreach_impl python_optimize -} diff --git a/sci-chemistry/pymol-plugins-promol/Manifest b/sci-chemistry/pymol-plugins-promol/Manifest deleted file mode 100644 index 521213fb730c..000000000000 --- a/sci-chemistry/pymol-plugins-promol/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST pymol-plugins-promol-3.0.2.zip 2219295 BLAKE2B 7e81de98ee20f6b22fabeca35b0825250c3b839b9ea51f6c0b51f15062c73810474bd377d0e39d3c2ac0d61f1b5cfb4174c53f1dfc67a11dfcd707eee417a7ed SHA512 e40e9c08e2cb1b223390d751bb1f32069924f1c23aa2b4bdafb6689254e6aa673d4412aca587792f660869f97a389db8a9183033d8b2394c998d0f911104d8d7 diff --git a/sci-chemistry/pymol-plugins-promol/metadata.xml b/sci-chemistry/pymol-plugins-promol/metadata.xml deleted file mode 100644 index 8937bad0b175..000000000000 --- a/sci-chemistry/pymol-plugins-promol/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild b/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild deleted file mode 100644 index 6cd842f3703d..000000000000 --- a/sci-chemistry/pymol-plugins-promol/pymol-plugins-promol-3.0.2-r1.ebuild +++ /dev/null @@ -1,60 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -PYTHON_COMPAT=( python2_7 ) - -inherit python-r1 - -DESCRIPTION="Fast and accurate regognition of active sites" -HOMEPAGE="https://www.rit.edu/cos/ezviz/ProMOL_dl.html" -SRC_URI="https://www.rit.edu/cos/ezviz/ProMOL.zip -> ${P}.zip" - -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux" -LICENSE="all-rights-reserved" -IUSE="" - -RESTRICT="mirror bindist" - -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND=" - ${PYTHON_DEPS} - dev-python/pmw:py2[${PYTHON_USEDEP}] - sci-chemistry/pymol[${PYTHON_USEDEP}]" -DEPEND="" - -S="${WORKDIR}/ProMOL Folder" - -src_prepare() { - python_copy_sources - preparation() { - cd "${BUILD_DIR}" || die - sed \ - -e "s:./modules/pmg_tk/startup:$(python_get_sitedir)/pmg_tk/startup/ProMol:g" \ - -i ProMOL_302.py || die - } - python_foreach_impl preparation -} - -src_install() { - dodoc *doc - dohtml -r Thanks.html EDMHelp.htm Help - - installation() { - cd "${BUILD_DIR}" || die - python_moduleinto pmg_tk/startup/ProMol - python_domodule PDB_List AminoPics Motifs *GIF pdb_entry_type.txt Master.txt Scripts - python_moduleinto pmg_tk/startup - python_domodule *.py - dosym ../../../../../../share/doc/${PF}/html/Help \ - $(python_get_sitedir)/pmg_tk/startup/ProMol/Help - dosym ../../../../../../share/doc/${PF}/html/Thanks.html \ - $(python_get_sitedir)/pmg_tk/startup/ProMol/Thanks.html - dosym ../../../../../../share/doc/${PF}/html/EDMHelp.htm \ - $(python_get_sitedir)/pmg_tk/startup/ProMol/EDMHelp.htm - } - python_foreach_impl installation -} diff --git a/sci-chemistry/sparky/Manifest b/sci-chemistry/sparky/Manifest deleted file mode 100644 index abb7a3bc2696..000000000000 --- a/sci-chemistry/sparky/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST sparky-source-3.115.tar.gz 4103686 BLAKE2B c7811aa135b10f21b8807447e2ab173f407ccc1446ff1307006f7f885e6e69983647991600720e02e4e738bb68338de01bc5d57577eacf20298db6d53a54b183 SHA512 33b0fd368f15bf4d091d7152a189f57279aea54fb89a12f15314f2a1414b073f7bd282afedeb72e79192195b0b6ac212ca74da3def513592af5400c118ac8e89 diff --git a/sci-chemistry/sparky/files/3.115-fix-c++14.patch b/sci-chemistry/sparky/files/3.115-fix-c++14.patch deleted file mode 100644 index 3a05ea7d85ce..000000000000 --- a/sci-chemistry/sparky/files/3.115-fix-c++14.patch +++ /dev/null @@ -1,32 +0,0 @@ -Fix the custom new/new[] operators in order to account for changed -noexcept semantics in C++11. -See also: https://bugs.gentoo.org/show_bug.cgi?id=596012 - -Patch by Peter Levine - ---- a/c++/memalloc.cc -+++ b/c++/memalloc.cc -@@ -39,7 +39,10 @@ - - // ---------------------------------------------------------------------------- - // --void *operator new(size_t size) throw(std::bad_alloc) -+void *operator new(size_t size) -+#if __cplusplus < 201103L -+throw(std::bad_alloc) -+#endif - { - void *value = allocate(size); - if (tracking_memory) -@@ -72,7 +75,10 @@ - - // ---------------------------------------------------------------------------- - // --void *operator new[](size_t size) throw(std::bad_alloc) -+void *operator new[](size_t size) -+#if __cplusplus < 201103L -+throw(std::bad_alloc) -+#endif - { - void *value = allocate(size); - if (tracking_memory) diff --git a/sci-chemistry/sparky/files/3.115-ldflags.patch b/sci-chemistry/sparky/files/3.115-ldflags.patch deleted file mode 100644 index bd4020387682..000000000000 --- a/sci-chemistry/sparky/files/3.115-ldflags.patch +++ /dev/null @@ -1,61 +0,0 @@ -diff --git a/c++/Makefile b/c++/Makefile -index aeb4daa..5cab356 100644 ---- a/c++/Makefile -+++ b/c++/Makefile -@@ -131,28 +131,28 @@ $(SPARKY_INSTALL)/python/sparky $(SPARKY_INSTALL)/python/lib-tk: - chmod 755 $@ - - sparky-no-python$(EXE_SUFFIX): main.o $(SPARKY_OBJS) -- $(CXX) -o $@ main.o $(SPARKY_OBJS) $(LDFLAGS) $(LDLIBS) -+ $(CXX) $(LDFLAGS) -o $@ main.o $(SPARKY_OBJS) $(LDLIBS) - - ucsfdata$(EXE_SUFFIX): ucsfdata.o $(NMR_OBJS) -- $(CXX) -o $@ ucsfdata.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ ucsfdata.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - pipe2ucsf$(EXE_SUFFIX): pipe2ucsf.o $(NMR_OBJS) -- $(CXX) -o $@ pipe2ucsf.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ pipe2ucsf.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - vnmr2ucsf$(EXE_SUFFIX): vnmr2ucsf.o $(NMR_OBJS) -- $(CXX) -o $@ vnmr2ucsf.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ vnmr2ucsf.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - bruk2ucsf$(EXE_SUFFIX): bruk2ucsf.o $(NMR_OBJS) -- $(CXX) -o $@ bruk2ucsf.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ bruk2ucsf.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - peaks2ucsf$(EXE_SUFFIX): peaks2ucsf.o $(NMR_OBJS) -- $(CXX) -o $@ peaks2ucsf.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ peaks2ucsf.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - matrix2ucsf$(EXE_SUFFIX): matrix2ucsf.o $(NMR_OBJS) -- $(CXX) -o $@ matrix2ucsf.o $(NMR_OBJS) $(LDFLAGS) $(SYSLIBS) $(EXTRALIBS) -+ $(CXX) $(LDFLAGS) -o $@ matrix2ucsf.o $(NMR_OBJS) $(SYSLIBS) $(EXTRALIBS) - - spy.so: python.o $(SPARKY_OBJS) -- $(CXX) $(LDSHARED) -o $@ python.o $(SPARKY_OBJS) $(LDFLAGS) $(LDLIBS) -+ $(CXX) $(LDSHARED) $(LDFLAGS) -o $@ python.o $(SPARKY_OBJS) $(LDLIBS) - - winsystem-$(PLATFORM).o: winsystem-$(PLATFORM).cc - $(CXX) $(CXXFLAGS) $(TKFLAGS) -c $(SPARKY_SRC)/winsystem-$(PLATFORM).cc -@@ -161,7 +161,7 @@ python.o: python.cc - $(CXX) $(CXXFLAGS) $(PYFLAGS) $(TKFLAGS) -c $(SPARKY_SRC)/python.cc - - _tkinter.so: _tkinter.o -- $(CXX) $(LDSHARED) -o $@ _tkinter.o $(LDFLAGS) $(TKLIBS) -+ $(CXX) $(LDSHARED) $(LDFLAGS) -o $@ _tkinter.o $(TKLIBS) - - _tkinter.o: _tkinter.c - $(CC) $(CFLAGS) $(TKFLAGS) $(PYFLAGS) -c $(SPARKY_SRC)/_tkinter.c -@@ -188,8 +188,8 @@ PYLDFLAGS = -L$(PYTHON_LIB)/config -lpython$(PYTHON_VERSION) - PYIFLAGS = -I$(PYTHON_INC) - - debug-sparky: main-debug.o python.o _tkinter.o $(SPARKY_OBJS) -- $(CXX) -o $@ main-debug.o python.o _tkinter.o $(SPARKY_OBJS) \ -- $(LDFLAGS) $(PYLDFLAGS) $(LDLIBS) -+ $(CXX) $(LDFLAGS) -o $@ main-debug.o python.o _tkinter.o $(SPARKY_OBJS) \ -+ $(PYLDFLAGS) $(LDLIBS) - - main-debug.o: main-debug.cc - $(CXX) $(CXXFLAGS) $(PYIFLAGS) -c $(SPARKY_SRC)/main-debug.cc diff --git a/sci-chemistry/sparky/files/3.115-makefile.patch b/sci-chemistry/sparky/files/3.115-makefile.patch deleted file mode 100644 index 7c810dcbd8ae..000000000000 --- a/sci-chemistry/sparky/files/3.115-makefile.patch +++ /dev/null @@ -1,17 +0,0 @@ -diff --git a/Makefile b/Makefile -index bb27034..30979bd 100644 ---- a/Makefile -+++ b/Makefile -@@ -48,6 +48,12 @@ TKINTER_PYMOD = _tkinter$(PYMOD_SUFFIX) - all nopython $(SPY_PYMOD) $(TKINTER_PYMOD) $(EXECUTABLES) debug-sparky clean: force - cd $(SPARKY_OBJ) && $(MAKE) -f $(SPARKY_SRC)/Makefile -e $@ - -+libraries: -+ cd $(SPARKY_OBJ) && $(MAKE) -f $(SPARKY_SRC)/Makefile -e $(SPY_PYMOD) $(TKINTER_PYMOD) -+ -+binaries: -+ cd $(SPARKY_OBJ) && $(MAKE) -f $(SPARKY_SRC)/Makefile -e $(EXECUTABLES) debug-sparky -+ - Makefile.dep TAGS: force - cd $(SPARKY_SRC) && $(MAKE) -f Makefile -e $@ - diff --git a/sci-chemistry/sparky/files/3.115-paths.patch b/sci-chemistry/sparky/files/3.115-paths.patch deleted file mode 100644 index 20d9a801ecd6..000000000000 --- a/sci-chemistry/sparky/files/3.115-paths.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/c++/paths.h b/c++/paths.h -index 2a21366..38aff52 100644 ---- a/c++/paths.h -+++ b/c++/paths.h -@@ -19,7 +19,7 @@ - // Installation subdirectories and files - // - #define SPARKY_MANUAL "manual" --#define SPARKY_LIB "lib" -+#define SPARKY_LIB "." - #define SPARKY_PRINT "print-prolog.ps" // under lib directory - #define SPARKY_RESOURCE "Sparky" // under lib directory - #define SPARKY_SAMPLE_DATA "example" diff --git a/sci-chemistry/sparky/files/3.115-wrapper-r1.patch b/sci-chemistry/sparky/files/3.115-wrapper-r1.patch deleted file mode 100644 index d83b5b8510cc..000000000000 --- a/sci-chemistry/sparky/files/3.115-wrapper-r1.patch +++ /dev/null @@ -1,41 +0,0 @@ -diff --git a/bin/sparky b/bin/sparky -index 8b51212..270723a 100644 ---- a/bin/sparky -+++ b/bin/sparky -@@ -4,18 +4,6 @@ - # - - # ----------------------------------------------------------------------------- --# Figure out Sparky installation directory from $0. --# --set sparky_exe = "$0" --while (-l "$sparky_exe") -- set ls_sparky_exe = `ls -l "$sparky_exe"` -- set sparky_exe = `echo "$ls_sparky_exe" | sed 's/.* -> //'` --end --set sparky_bin = `dirname "$sparky_exe"` --set sparky_bin = `cd "$sparky_bin"; pwd` --set sparky_inst = `dirname "$sparky_bin"` -- --# ----------------------------------------------------------------------------- - # Sparky uses the SPARKY_INSTALL environment variable to find its - # application resource file and print prolog file. - # -@@ -25,7 +13,7 @@ setenv SPARKY_INSTALL "$sparky_inst" - # If Python is available start Sparky as a Python extension. - # Otherwise the standalone version of Sparky is started. - # --set PYTHON = "$SPARKY_INSTALL/python2.5/bin/python2.5" -+set PYTHON = GENTOO_PYTHON - if (! -e "$PYTHON") then - set PYTHON = python2.5 - endif -@@ -79,7 +67,7 @@ if ($status == 0) then - # --------------------------------------------------------------------------- - # Add the Sparky package and Tkinter to the Python path - # -- set SPARKY_PYTHONPATH = "$SPARKY_INSTALL/python:$SPARKY_INSTALL/python/lib-tk" -+ set SPARKY_PYTHONPATH = "$SPARKY_INSTALL/python:$SPARKY_INSTALL/python/sparky" - if ($?PYTHONPATH) then - setenv PYTHONPATH "${SPARKY_PYTHONPATH}:$PYTHONPATH" - else diff --git a/sci-chemistry/sparky/metadata.xml b/sci-chemistry/sparky/metadata.xml deleted file mode 100644 index 8937bad0b175..000000000000 --- a/sci-chemistry/sparky/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-chemistry@gentoo.org</email> - <name>Gentoo Chemistry Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-chemistry/sparky/sparky-3.115-r2.ebuild b/sci-chemistry/sparky/sparky-3.115-r2.ebuild deleted file mode 100644 index e664747fea13..000000000000 --- a/sci-chemistry/sparky/sparky-3.115-r2.ebuild +++ /dev/null @@ -1,117 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 - -PYTHON_COMPAT=( python2_7 ) -PYTHON_REQ_USE="tk" - -inherit flag-o-matic prefix python-single-r1 toolchain-funcs - -DESCRIPTION="Graphical NMR assignment and integration program for large polymers" -HOMEPAGE="http://www.cgl.ucsf.edu/home/sparky/" -SRC_URI="http://www.cgl.ucsf.edu/home/sparky/distrib-${PV}/${PN}-source-${PV}.tar.gz" - -LICENSE="sparky" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" -IUSE="examples" -REQUIRED_USE="${PYTHON_REQUIRED_USE}" - -RDEPEND="${PYTHON_DEPS} - app-shells/tcsh - dev-lang/tcl:0= - dev-lang/tk:0=" -DEPEND="${RDEPEND}" - -RESTRICT="mirror" - -S="${WORKDIR}/${PN}" - -PATCHES=( - "${FILESDIR}"/${PV}-ldflags.patch - "${FILESDIR}"/${PV}-wrapper-r1.patch - "${FILESDIR}"/${PV}-paths.patch - "${FILESDIR}"/${PV}-makefile.patch - "${FILESDIR}"/${PV}-fix-c++14.patch -) - -pkg_setup() { - python-single-r1_pkg_setup - TKVER=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2) - PYVER=${EPYTHON#python} -} - -src_prepare() { - default - - sed -i \ - -e "s:^\(set PYTHON =\).*:\1 ${PYTHON}:g" \ - -e "s:^\(setenv SPARKY_INSTALL[[:space:]]*\).*:\1 ${EPREFIX}/usr/$(get_libdir)/${PN}:g" \ - -e "s:tcl8.4:tcl${TKVER}:g" \ - -e "s:tk8.4:tk${TKVER}:g" \ - -e "s:^\(setenv TCLTK_LIB[[:space:]]*\).*:\1 ${EPREFIX}/usr/$(get_libdir):g" \ - "${S}"/bin/sparky || die - eprefixify "${S}"/bin/sparky -} - -src_compile() { - emake \ - SPARKY="${S}" \ - PYTHON_VERSION="${PYVER}" \ - PYTHON_PREFIX="${EPREFIX}/usr" \ - PYTHON_LIB="${EPREFIX}/usr/$(get_libdir)" \ - PYTHON_INC="$(python_get_includedir)" \ - TK_PREFIX="${EPREFIX}/usr" \ - TCLTK_VERSION="${TKVER}" \ - TKLIBS="-L${EPREFIX}/usr/$(get_libdir)/ -ltk -ltcl -lX11" \ - CXX="$(tc-getCXX)" \ - CC="$(tc-getCC)" \ - LDSHARED="-shared" \ - binaries - - rm c++/*.o || die - - emake \ - SPARKY="${S}" \ - PYTHON_VERSION="${PYVER}" \ - PYTHON_PREFIX="${EPREFIX}/usr" \ - PYTHON_LIB="${EPREFIX}/usr/$(get_libdir)" \ - PYTHON_INC="$(python_get_includedir)" \ - TK_PREFIX="${EPREFIX}/usr" \ - TCLTK_VERSION="${TKVER}" \ - TKLIBS="-L${EPREFIX}/usr/$(get_libdir)/ -ltk -ltcl -lX11" \ - CXX="$(tc-getCXX)" \ - CC="$(tc-getCC)" \ - CXXFLAGS="${CXXFLAGS} -fPIC" \ - CFLAGS="${CFLAGS} -fPIC" \ - LDSHARED="-shared -fPIC" \ - libraries -} - -src_install() { - # The symlinks are needed to avoid hacking the complete code to fix the locations - dobin c++/{{bruk,matrix,peaks,pipe,vnmr}2ucsf,ucsfdata,sparky-no-python} bin/${PN} - - insinto /usr/share/${PN}/ - doins lib/{print-prolog.ps,Sparky} - dosym ../../share/${PN}/print-prolog.ps /usr/$(get_libdir)/${PN}/print-prolog.ps - dosym ../../share/${PN}/Sparky /usr/$(get_libdir)/${PN}/Sparky - - python_moduleinto ${PN} - python_domodule python/*.py c++/{spy.so,_tkinter.so} - dosym ../${EPYTHON}/site-packages /usr/$(get_libdir)/${PN}/python - - rm manual/{pkzip.cfg,Makefile} || die - mv {manual/,}manual.ps || die - local DOCS=( README manual.ps ) - local HTML_DOCS=( manual/. ) - einstalldocs - newdoc python/README README.python - dosym ../../share/doc/${PF}/html /usr/$(get_libdir)/${PN}/manual - - if use examples; then - dodoc -r example - dosym ../../share/doc/${PF}/example /usr/$(get_libdir)/${PN}/example - fi -} diff --git a/www-apps/viewvc/Manifest b/www-apps/viewvc/Manifest deleted file mode 100644 index 2e9009cd2e59..000000000000 --- a/www-apps/viewvc/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST viewvc-1.1.26.tar.gz 616103 BLAKE2B e622dbf247641ddcdd68d54a8e10168d4b7506c2cb53f6d2e30b9bac36207520cde57d81875e1e0106287da9b4bf312abc2c69b15d206e557cf93a2b26cae446 SHA512 af70d4344fe92f942debb407b6fad909e250ba2656499f5229e1c2f018dfbd783d0cebd28c49a429bd7b155bb6db02cead602384f91b99b7ced6aa365e32bb8e diff --git a/www-apps/viewvc/metadata.xml b/www-apps/viewvc/metadata.xml deleted file mode 100644 index e3f695364293..000000000000 --- a/www-apps/viewvc/metadata.xml +++ /dev/null @@ -1,13 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>web-apps@gentoo.org</email> - <name>Gentoo Webapps</name> - </maintainer> - <use> - <flag name="cvsgraph">Add <pkg>dev-vcs/cvsgraph</pkg> support to show graphical views of revisions and branches</flag> - <flag name="mod_wsgi">Add <pkg>www-apache/mod_wsgi</pkg> support</flag> - <flag name="pygments">Add <pkg>dev-python/pygments</pkg> support for syntax highlighting</flag> - </use> -</pkgmetadata> diff --git a/www-apps/viewvc/viewvc-1.1.26-r1.ebuild b/www-apps/viewvc/viewvc-1.1.26-r1.ebuild deleted file mode 100644 index fa7bfd6b69c2..000000000000 --- a/www-apps/viewvc/viewvc-1.1.26-r1.ebuild +++ /dev/null @@ -1,115 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=6 -PYTHON_COMPAT=( python2_7 ) - -inherit eutils python-single-r1 webapp - -WEBAPP_MANUAL_SLOT="yes" - -DESCRIPTION="ViewVC, a web interface to CVS and Subversion" -HOMEPAGE="http://viewvc.org/" -SRC_URI="http://viewvc.org/downloads/${P}.tar.gz" - -LICENSE="BSD-2" -SLOT="0" -KEYWORDS="amd64 ~ppc x86" -IUSE="cvs cvsgraph mod_wsgi mysql pygments +subversion" - -DEPEND="" -RDEPEND="${PYTHON_DEPS} - cvs? ( dev-vcs/rcs ) - - mod_wsgi? ( www-apache/mod_wsgi[${PYTHON_SINGLE_USEDEP}] ) - !mod_wsgi? ( virtual/httpd-cgi ) - - cvsgraph? ( >=dev-vcs/cvsgraph-1.5.0 ) - - $(python_gen_cond_dep ' - subversion? ( >=dev-vcs/subversion-1.3.1[python,${PYTHON_MULTI_USEDEP}] ) - - mysql? ( >=dev-python/mysql-python-0.9.0[${PYTHON_MULTI_USEDEP}] ) - pygments? ( - dev-python/pygments[${PYTHON_MULTI_USEDEP}] - app-misc/mime-types - ) - ') -" - -REQUIRED_USE="${PYTHON_REQUIRED_USE} - || ( cvs subversion )" - -pkg_setup() { - python-single-r1_pkg_setup - webapp_pkg_setup -} - -src_prepare() { - eapply_user - - find bin/ -type f -print0 | xargs -0 sed -i \ - -e "s|\(^LIBRARY_DIR\)\(.*\$\)|\1 = \"$(python_get_sitedir)/${PN}\"|g" \ - -e "s|\(^CONF_PATHNAME\)\(.*\$\)|\1 = \"../conf/viewvc.conf\"|g" || die - - sed -i -e "s|\(self\.options\.template_dir\)\(.*\$\)|\1 = \"${MY_APPDIR}/templates\"|" \ - lib/config.py || die - - sed -i -e "s|^template_dir.*|#&|" conf/viewvc.conf.dist || die - sed -i -e "s|^#mime_types_files =.*|mime_types_files = /etc/mime.types|" conf/viewvc.conf.dist || die - mv conf/viewvc.conf{.dist,} || die - mv conf/cvsgraph.conf{.dist,} || die - - python_fix_shebang . -} - -src_install() { - webapp_src_preinst - - newbin bin/standalone.py viewvc-standalone-server - - dodoc CHANGES COMMITTERS INSTALL README - - python_moduleinto viewvc - python_domodule lib/. - - insinto "${MY_APPDIR}" - doins -r templates/ - doins -r templates-contrib/ - - if use mysql; then - exeinto "${MY_HOSTROOTDIR}/bin" - doexe bin/{*dbadmin,make-database,loginfo-handler} - fi - - insinto "${MY_HOSTROOTDIR}/conf" - doins conf/{viewvc,cvsgraph}.conf - - exeinto "${MY_CGIBINDIR}" - doexe bin/cgi/viewvc.cgi - if use mysql; then - doexe bin/cgi/query.cgi - fi - - exeinto "${MY_CGIBINDIR}" - if use mod_wsgi; then - doexe bin/wsgi/viewvc.wsgi - if use mysql; then - doexe bin/wsgi/query.wsgi - fi - else - doexe bin/wsgi/viewvc.fcgi - if use mysql; then - doexe bin/wsgi/query.fcgi - fi - fi - - webapp_configfile "${MY_HOSTROOTDIR}/conf/"{viewvc,cvsgraph}.conf - - webapp_src_install -} - -pkg_postinst() { - webapp_pkg_postinst - elog "Now read INSTALL in /usr/share/doc/${PF} to configure ${PN}" -} |