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diff --git a/sci-biology/allpathslg/allpathslg-47093.ebuild b/sci-biology/allpathslg/allpathslg-47093.ebuild
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+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit autotools eutils flag-o-matic
+
+DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
+HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
+SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 -x86"
+
+DEPEND="
+	dev-libs/boost
+	!sci-biology/allpaths
+	sci-biology/vaal"
+RDEPEND=""
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-gcc4.9.patch
+	sed -i 's/-ggdb//' configure.ac || die
+	eautoreconf
+}
+
+src_install() {
+	default
+	# Provided by sci-biology/vaal
+	for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
+		rm "${ED}/usr/bin/$i" || die
+	done
+}