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Diffstat (limited to 'sci-biology/allpathslg/allpathslg-52488.ebuild')
| -rw-r--r-- | sci-biology/allpathslg/allpathslg-52488.ebuild | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/allpathslg/allpathslg-52488.ebuild b/sci-biology/allpathslg/allpathslg-52488.ebuild new file mode 100644 index 000000000000..0b0b806e5cf6 --- /dev/null +++ b/sci-biology/allpathslg/allpathslg-52488.ebuild @@ -0,0 +1,48 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit autotools eutils flag-o-matic + +DESCRIPTION="De novo assembly of whole-genome shotgun microreads" +# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12 +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64" +IUSE="openmp" + +DEPEND=" + dev-libs/boost + !sci-biology/allpaths + sci-biology/vaal" +RDEPEND="" + +PATCHES=("${FILESDIR}/${P}_fix-buildsystem.patch" "${FILESDIR}/${P}_remove-namespace-std.patch") + +pkg_pretend() { + # as of release 44849, GCC 4.7.0 (or higher) is required + # seems pre gcc-4.7 users must stay with: + # ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz + if [[ ${MERGE_TYPE} != binary ]]; then + [[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \ + die "You need to use gcc >4.7" + fi +} + +src_prepare() { + default_src_prepare + + eautoreconf +} + +src_configure() { + local myeconfargs=( + $(use_enable openmp) + ) + default_src_configure +} |