diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 15:15:43 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-06-21 15:15:43 +0000 |
| commit | 0a2965e5b4004252d9aeb7e1ee2ad6f83e4d56cd (patch) | |
| tree | 43ffc1f5cf136eba34df9426d84e914beefd656c /sci-biology/bowtie | |
| parent | Version bump. (diff) | |
| download | historical-0a2965e5b4004252d9aeb7e1ee2ad6f83e4d56cd.tar.gz historical-0a2965e5b4004252d9aeb7e1ee2ad6f83e4d56cd.tar.bz2 historical-0a2965e5b4004252d9aeb7e1ee2ad6f83e4d56cd.zip | |
Version bump
Package-Manager: portage-2.2_rc30/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/bowtie')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/bowtie/Manifest | 6 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.10.0.ebuild (renamed from sci-biology/bowtie/bowtie-0.9.9.1.ebuild) | 10 |
3 files changed, 16 insertions, 8 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index 1d56efc50429..b2af845d92c5 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.3 2009/05/02 23:48:39 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.4 2009/06/21 15:15:43 weaver Exp $ + +*bowtie-0.10.0 (21 Jun 2009) + + 21 Jun 2009; Andrey Kislyuk <weaver@gentoo.org> -bowtie-0.9.9.1.ebuild, + +bowtie-0.10.0.ebuild: + Version bump *bowtie-0.9.9.2 (02 May 2009) diff --git a/sci-biology/bowtie/Manifest b/sci-biology/bowtie/Manifest index ace99dd6eafa..d84a2e51c943 100644 --- a/sci-biology/bowtie/Manifest +++ b/sci-biology/bowtie/Manifest @@ -1,6 +1,6 @@ -DIST bowtie-0.9.9.1-src.zip 10368568 RMD160 91caef019a7dd7f576b11c13fe1fbf9233ee4924 SHA1 701d6ad400f624085d38e8106a3c3779860d0be0 SHA256 5b652222f3934d9127c77f779cdff18fd37ef913fe9207d77e978eada11b0e31 +DIST bowtie-0.10.0-src.zip 10255341 RMD160 33218e30da716cf358ca0df68e5dfedb16948e91 SHA1 2d9f0e2a9b2ff8db0798a35564e11fbf69479bcd SHA256 48eb4f5ed98f344ebd2739cbdef77b9747abb2b5bf290781ddb853471c0b72cf DIST bowtie-0.9.9.2-src.zip 10234128 RMD160 ad728d8f23742ece2d9d2bfe708b76cdcabf32b0 SHA1 f1d2afd5391d08f7481fe0eb5f38e9d3878e9598 SHA256 c002647a0412ed736cfbd879b3a3194286d2973c6e3e32b2f7d749bebbd96228 -EBUILD bowtie-0.9.9.1.ebuild 803 RMD160 5dd902f5b54309983ed16a71afb1b2cce137a4c9 SHA1 5ea28ceb989c3132d0bc3e74fccbaf312d1afd2f SHA256 7b5573ce3a66751b2b7d79e2f390aa9554691c2d459c6485793f010121bbd3ac +EBUILD bowtie-0.10.0.ebuild 861 RMD160 cd67e587879e0f019d5b3a74b15c365aebc4eaed SHA1 bf86360991819d2bebbe89d0bbefc01b3e13a30d SHA256 1ccb7b06831dd21d88325ca4d527d5e0848e6453130db4cbdeced5db00c3bfe9 EBUILD bowtie-0.9.9.2.ebuild 803 RMD160 02b3cc8d5fc424b1ab859ca3b5556f59c09cbfa4 SHA1 5a910d97e8112e54ed8bb52346f3834498c22b7d SHA256 837f262ce03aeda12bf4a63d833fde9ce2e43eb633c9fd58ab3835c38467690b -MISC ChangeLog 697 RMD160 b03b61c6cfe17e77ed15df317e62ae250671c317 SHA1 3bb0a764efa05bbddd062bd330302586b51a92a2 SHA256 d82c769c09019013674d1ec6edcd9a032bfb02fe550a2af8e15d3177a43e7b65 +MISC ChangeLog 842 RMD160 60b7d6895b51935edb1fd888e0430c778b6d5ca6 SHA1 2d4a61b991d35525ecd7055995c1126fe8efec23 SHA256 e570f5d5be8cb287d7582dc85cb5b140d4475ff051cf7d4a619b737fab838adc MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/bowtie/bowtie-0.9.9.1.ebuild b/sci-biology/bowtie/bowtie-0.10.0.ebuild index ea6ef6fb2bed..f38f49aa0c0f 100644 --- a/sci-biology/bowtie/bowtie-0.9.9.1.ebuild +++ b/sci-biology/bowtie/bowtie-0.10.0.ebuild @@ -1,6 +1,8 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.9.9.1.ebuild,v 1.2 2009/04/23 19:15:58 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.10.0.ebuild,v 1.1 2009/06/21 15:15:43 weaver Exp $ + +EAPI="2" DESCRIPTION="An ultrafast memory-efficient short read aligner" HOMEPAGE="http://bowtie-bio.sourceforge.net/" @@ -9,15 +11,15 @@ SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" LICENSE="Artistic" SLOT="0" IUSE="" -KEYWORDS="amd64 x86" +KEYWORDS="~amd64 ~x86" DEPEND="app-arch/unzip" RDEPEND="" # NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS -src_unpack() { - unpack ${A} +src_prepare() { sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die } |