sci-biology/bioperl: Drop versions with unsolvable dep sets

Package-Manager: portage-2.2.0_alpha142/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916

4 files changed, 16 insertions, 144 deletions

diff --git a/sci-biology/bioperl/ChangeLog b/sci-biology/bioperl/ChangeLog
index 48149987fa64..9758b6ccb332 100644
--- a/sci-biology/bioperl/ChangeLog
+++ b/sci-biology/bioperl/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bioperl
 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.51 2012/04/12 17:40:35 tove Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/ChangeLog,v 1.52 2012/10/28 14:58:15 jlec Exp $
+
+  28 Oct 2012; Justin Lecher <jlec@gentoo.org> -bioperl-1.5.1-r1.ebuild,
+  -bioperl-1.6.1.ebuild:
+  Drop versions with unsolvable dep sets
 
   12 Apr 2012; Torsten Veller <tove@gentoo.org> metadata.xml:
   Fix cpan distribution in metadata.xml
diff --git a/sci-biology/bioperl/Manifest b/sci-biology/bioperl/Manifest
index 8dcdbe12a1ba..1188e856bd2e 100644
--- a/sci-biology/bioperl/Manifest
+++ b/sci-biology/bioperl/Manifest
@@ -1,21 +1,17 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
-DIST BioPerl-1.6.0.tar.bz2 5640786 RMD160 89261afbbc3754a1dd78934b7b8b653593aa3427 SHA1 7b442ddcb02233c4cb9963a2ea883f755f6904bb SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6
-DIST BioPerl-1.6.1.tar.bz2 6919711 RMD160 ffde5f89f5d66df0076a6a4acdf6afe79a9fa9b4 SHA1 2343d53b4c42e75f01f2fea2bb570b63db58957b SHA256 6c69a2c22b339b25e0545e2a52eee19c2aadd8ac062df259f64de22531f2ec57
-DIST BioPerl-1.6.901.tar.gz 12284856 RMD160 d852438ab4720501b8bd62fa5df4ba302981b410 SHA1 d0650c5e16895c13798003dd3a57bced23e7a9ce SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01
-DIST bioperl-1.5.1.tar.bz2 5538613 RMD160 422bdd0dc17dd246ec1fc3ae6fe020705111892d SHA1 9841a458fd928eb9715f14eb686c7b1af3a379e7 SHA256 696c8bd162bc79fa3c75eeb63bb42f8cbcbb4b72de4dcb3bec7ea7a293506f6c
-EBUILD bioperl-1.5.1-r1.ebuild 1171 RMD160 3c1dbcbef4460ef9be4ef7bddc115fd87ade48b0 SHA1 98f1ab6e49bbb66341e92e05149d381ac2f85fa6 SHA256 7d43e02f3538b482606b28443cd524de8a9aa03fe2dab86762ceab8199deb679
-EBUILD bioperl-1.6.0-r2.ebuild 1813 RMD160 4dc55408dc5a0868769a75a458e02de7fe3c28b5 SHA1 ba78721a68c3d15d8959373ec4a8b9f78945e145 SHA256 a126ac668e16c021ec4e2bc8722da8d4b536f49c10075f829bf44fd41e7b7349
-EBUILD bioperl-1.6.1.ebuild 2024 RMD160 d7a3a427bbf710c86abba4cbcb77943ac591be37 SHA1 d03427a93f4cbf62b68f7d9068ce0b2dfb641bf7 SHA256 52e757a92f8e699cceedc668cc0dbcf3db7f0577d6816af405d25dea6976eb11
-EBUILD bioperl-1.6.9.ebuild 1720 RMD160 4b8eb4ed010c865ddde87393835bbd908aa8868c SHA1 a27f52227c17d6335e89185de3924b8668ce0b18 SHA256 81e47a7f2e37d4af9894e26144dcb65544d6281083c0772203c6d12a73ed10c9
-EBUILD bioperl-9999-r1.ebuild 1951 RMD160 edc79edce46fd317ae537c9707204c145e005b2b SHA1 5f6ca0ba54f8af1e32f8427d684d868e6f8ee788 SHA256 a53656e9165bfaaa42ef30fc268531e9c1775380c59bdcb5ea0d3c16f51f8a24
-MISC ChangeLog 8882 RMD160 6e4fa2cc82c0a99f1d9d04f04f5af46f409c5dce SHA1 aab492f9f152de0a495a274f39d7a300d41489da SHA256 fc9c2c26ba00e7ee51ceefdc52713a26632942831dc5f2501c9dbd4dcea0f88d
-MISC metadata.xml 427 RMD160 302b77438cdcb846d7d13b0cae003c0a84bfb9c1 SHA1 87aaad3120267c00c42efae696f03e82e65b7850 SHA256 7cf29d5c98ef7709f63f887cabe6210ef0fb575e647776bef3c8b4cdf30ec44a
+DIST BioPerl-1.6.0.tar.bz2 5640786 SHA256 50a35b1b2552c8f54c83f2bbba7b36264e94443374b86b389208437c8cae3bf6
+DIST BioPerl-1.6.901.tar.gz 12284856 SHA256 8c74bde900222ce3926491ee103997c841c8755148c8dcaf0be1abfd61c5ac01 SHA512 227387437c940da1435ed83fad6ec2168ca12a729c90dc557e84750c6474213874c23a8f23e50db4027909469627baee581faa11be6208c8e0a5453a01c7eca4 WHIRLPOOL feb1f93a617e0135ab84b0eeb36ac986e817ce76ada0f40518090f6a480fbb1047339b33fcd11ccff444f89c4a06c41b5abaab66b662a50f17ae34f9b22d66fd
+EBUILD bioperl-1.6.0-r2.ebuild 1813 SHA256 a126ac668e16c021ec4e2bc8722da8d4b536f49c10075f829bf44fd41e7b7349 SHA512 e18ef7c83be24ffe0eade9087d06d4140385f4999c5d40e2c0fef4dd8cc72d914715fbbfaba104ed4b6003159d0c764d7429d5935d867d905b5f9c143ce98762 WHIRLPOOL c03186291c27d6ca9cff44d26907c875525abc31186f3fa6c53d2779d59f2114dbb83f9dc345235ff22e3569c59201508d9f2e8d6eaa8b5bf7527691eb846a87
+EBUILD bioperl-1.6.9.ebuild 1720 SHA256 81e47a7f2e37d4af9894e26144dcb65544d6281083c0772203c6d12a73ed10c9 SHA512 9d600a7927cf889e687954759a9815e27801c68adbe7e7a8d94033192a2a9120543276f5d59b919f14a21bbd6a438a80c6b78c2168cc1f97b72e5edbeb289126 WHIRLPOOL e14ac00d889606a9eea43580e7f3ed2405deca51d8648557b298f5081ea003ac5154c3dd5318ec154b5818eb578a57ff89eed98adb41b232d37e6ad31f978b42
+EBUILD bioperl-9999-r1.ebuild 1951 SHA256 a53656e9165bfaaa42ef30fc268531e9c1775380c59bdcb5ea0d3c16f51f8a24 SHA512 881f6c9edea33da1cbbb25f05d02e32fa150425e1d592b4d513ab7f8b4765f50afab223e1dbbb4fb97fb26953d5b03cbb98b2ea1afa01d9243287f9df152f9af WHIRLPOOL 90aa6d9123ca135528eebaff8cb624c1506bb7643b2bd903114da31f48e39b061fd027a8c18960c50839a4bfdb22622f7abf04e6f4a5e62e79b512201e98404e
+MISC ChangeLog 9022 SHA256 6bc33f3e8a13200f0b875f152a915760104c9fcca1355d98b46a65717f6817bb SHA512 40e667f4ed97a9bec74e0cd2f239a7d5e00d9d5b840c98d42b8c3f050f23380de52e947be5b0fabb05d5edec2f4ef9fc7e63b32958c01091c5c084ea547657d5 WHIRLPOOL f8bc413ce30b5c88feb5d2a7a1ef17e4063968123f419d7cf9d242d9e2ef4246e9e78232a098d4370ceafc0efd2a65859f68f530e9f8f583fb9c6f8650516121
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diff --git a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild b/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
deleted file mode 100644
index 38124aa777b1..000000000000
--- a/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.5.1-r1.ebuild,v 1.11 2012/03/24 19:44:30 armin76 Exp $
-
-inherit perl-module eutils
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/${P}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86"
-IUSE="mysql gd"
-
-DEPEND="
-	virtual/perl-File-Temp
-	dev-perl/HTML-Parser
-	dev-perl/IO-String
-	dev-perl/IO-stringy
-	dev-perl/SOAP-Lite
-	virtual/perl-Storable
-	dev-perl/XML-DOM
-	dev-perl/XML-Parser
-	dev-perl/XML-Writer
-	dev-perl/XML-Twig
-	dev-perl/libxml-perl
-	dev-perl/libwww-perl
-	dev-perl/Graph
-	dev-perl/Text-Shellwords
-	~sci-libs/io_lib-1.8.12b
-	!>=sci-libs/io_lib-1.9
-	gd? (
-			>=dev-perl/GD-1.32-r1
-			dev-perl/SVG
-			dev-perl/GD-SVG
-		)
-	mysql? ( >=dev-perl/DBD-mysql-2.1004-r3 )"
-
-src_compile() {
-	yes "" | perl Makefile.PL ${myconf} \
-	         PREFIX=${D}/usr INSTALLDIRS=vendor
-}
-
-src_test() {
-	make test || die "Tests failed."
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}
diff --git a/sci-biology/bioperl/bioperl-1.6.1.ebuild b/sci-biology/bioperl/bioperl-1.6.1.ebuild
deleted file mode 100644
index 78dd53016cc0..000000000000
--- a/sci-biology/bioperl/bioperl-1.6.1.ebuild
+++ /dev/null
@@ -1,76 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bioperl/bioperl-1.6.1.ebuild,v 1.3 2009/10/02 14:51:51 weaver Exp $
-
-EAPI="2"
-
-inherit perl-module
-
-SUBPROJECTS="+db +network +run"
-MIN_PV="1.6"
-
-DESCRIPTION="Perl tools for bioinformatics - Core modules"
-HOMEPAGE="http://www.bioperl.org/"
-SRC_URI="http://www.bioperl.org/DIST/BioPerl-${PV}.tar.bz2"
-
-LICENSE="Artistic GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="-minimal graphviz sqlite ${SUBPROJECTS}"
-
-CDEPEND="dev-perl/Data-Stag
-	dev-perl/libwww-perl
-	!minimal? (
-		dev-perl/Ace
-		dev-perl/Spreadsheet-ParseExcel
-		dev-perl/Spreadsheet-WriteExcel
-		>=dev-perl/XML-SAX-0.15
-		dev-perl/Graph
-		dev-perl/SOAP-Lite
-		dev-perl/Array-Compare
-		dev-perl/SVG
-		dev-perl/XML-Simple
-		dev-perl/XML-Parser
-		dev-perl/XML-Twig
-		>=dev-perl/HTML-Parser-3.60
-		>=dev-perl/XML-Writer-0.4
-		dev-perl/Clone
-		dev-perl/XML-DOM
-		dev-perl/set-scalar
-		dev-perl/XML-XPath
-		dev-perl/XML-DOM-XPath
-		dev-perl/Algorithm-Munkres
-		dev-perl/Data-Stag
-		dev-perl/Math-Random
-		dev-perl/PostScript
-		dev-perl/Convert-Binary-C
-		dev-perl/SVG-Graph
-	)
-	graphviz? ( dev-perl/GraphViz )
-	sqlite? ( dev-perl/DBD-SQLite )"
-DEPEND="virtual/perl-Module-Build
-	${CDEPEND}"
-# In perl-overlay
-#	>=virtual/perl-ExtUtils-Manifest-1.52 (to CDEPEND?)
-#	>=perl-CPAN/perl-CPAN-1.81
-RDEPEND="${CDEPEND}"
-PDEPEND="!minimal? ( dev-perl/Bio-ASN1-EntrezGene )
-	db? ( >=sci-biology/bioperl-db-${MIN_PV} )
-	network? ( >=sci-biology/bioperl-network-${MIN_PV} )
-	run? ( >=sci-biology/bioperl-run-${MIN_PV} )"
-
-S="${WORKDIR}/BioPerl-${PV}"
-
-src_configure() {
-	sed -i -e '/add_post_install_script.*symlink_script.pl/d' \
-		-e "/'CPAN' *=> *1.81/d" \
-		-e "/'ExtUtils::Manifest' *=> *'1.52'/d" "${S}/Build.PL" || die
-
-	if use minimal && use graphviz; then die "USE flags minimal and graphviz cannot be used together"; fi
-	perl-module_src_configure
-}
-
-src_install() {
-	mydoc="AUTHORS BUGS FAQ"
-	perl-module_src_install
-}