Clean old

Package-Manager: portage-2.2_rc94/cvs/Linux x86_64

4 files changed, 16 insertions, 134 deletions

diff --git a/sci-biology/t-coffee/ChangeLog b/sci-biology/t-coffee/ChangeLog
index 299f91f76eb3..237e917dfa71 100644
--- a/sci-biology/t-coffee/ChangeLog
+++ b/sci-biology/t-coffee/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/t-coffee
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.47 2010/10/15 18:51:43 ranger Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/ChangeLog,v 1.48 2010/10/15 19:02:28 jlec Exp $
+
+  15 Oct 2010; Justin Lecher <jlec@gentoo.org> -t-coffee-5.65.ebuild,
+  -t-coffee-8.14.ebuild:
+  Clean old
 
   15 Oct 2010; Brent Baude <ranger@gentoo.org> t-coffee-8.69.ebuild:
   stable ppc, bug 339575
diff --git a/sci-biology/t-coffee/Manifest b/sci-biology/t-coffee/Manifest
index 1fcc2fdbb06b..9c414f5e970e 100644
--- a/sci-biology/t-coffee/Manifest
+++ b/sci-biology/t-coffee/Manifest
@@ -1,12 +1,18 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX 8.69-flags.patch 3118 RMD160 f79da4565606b5ae9a7d6d4fb949092ce4199d1b SHA1 a6c08ad84553500e3c8667a636fc0f191923462c SHA256 44449539bda6d4a84f6ba156f524b91bb2b34d12a530834256c414588228dc51
 AUX 8.69-test.patch 524 RMD160 21970ae93e40f630db15b3aaa267807e1d0cdd38 SHA1 bf27dc682ebbf4ba2a4df507f5b7e22197e9f38f SHA256 05ad8d6a9bce520d49ed7de18143067858346b18766f42e597cc0974d4d8957a
-DIST T-COFFEE_distribution_Version_5.65.tar.gz 2892013 RMD160 50c04dfbda649ebbf0e691a74bd62433bb1dbd14 SHA1 a8dc4bcc37eaa8237670c9daf1b260c8452fab89 SHA256 536cfe25648fbaf4d96baf36b3c8d4d2d81e97b2939e09e89880cae39893d0c6
-DIST T-COFFEE_distribution_Version_8.14.tar.gz 4202237 RMD160 b292e4d4dd6576ad10dacafbb19eaa4f9154b85c SHA1 0286f719569f6717f879b38af520939f4399ab07 SHA256 ffc527e65e81cabc912a2816895efd46fb28bbd45e50327cd7e5d01ba88bcb03
 DIST T-COFFEE_distribution_Version_8.69.tar.gz 4112765 RMD160 5a2e7e089a5d2cc536247b9b26c7b6c216d7ef03 SHA1 3db6557c40587dba005179c98cc5b63b6dca9e44 SHA256 f346376bf341ce30f30f8c077820da466bed3e560c02d0ddd1a992381855d0f5
 DIST T-COFFEE_distribution_Version_8.93.tar.gz 4129848 RMD160 e88c519f19755017f1ade2abb2d9f04dc59364b6 SHA1 1ac365f0e0829a3e6c12ad99f36e0d5a5c9e021a SHA256 a2567d01d683f3e7faad72cc0d4e1749fec97cb64092db50f3d6696f523d8f80
-EBUILD t-coffee-5.65.ebuild 2008 RMD160 3ad0852e9425e1717be2e3a24730bef64dc26105 SHA1 d9b116840eb5f22c96c4e0a30ca83aad9746b26c SHA256 ad91bc539fcd25f74425c91a8137ff0c21d7e0ffc20add65b748b0a519674877
-EBUILD t-coffee-8.14.ebuild 1863 RMD160 9dcfe5c6bbd1cf21d9f0ed0c9bae2ffab4816b02 SHA1 67cfd906a72e472fbf83156d0d3ee5371ad8b6b1 SHA256 75e3382c765661e1aca0900fc389a04999b72c08ee650950d5c3c98d3d21378f
 EBUILD t-coffee-8.69.ebuild 1911 RMD160 cc9ef2ff6c6bc30e62626c6992a21c689c5248dc SHA1 d018fa791b924db9270034ee4d31b3ff7d00a6c4 SHA256 ddfa097ae40b679d57ba3627c3557f2f450725168ec3294745527b62c17760ad
 EBUILD t-coffee-8.93.ebuild 1898 RMD160 741c4b5b18ca69c3065866f574c8b864762cd9c5 SHA1 ea965774e95c94d748330a76c96bb14f70d910d0 SHA256 3c77e829bdb7bf982f2ac2f106d458351c88881fddccf961085bd342eedc1e0e
-MISC ChangeLog 6214 RMD160 07ee18aee87fef9e771f41eb2b5b548bd7a2c271 SHA1 b6b1e65b32362739cf143a262fcad1ef3d700b71 SHA256 2a2c1be76c1d4a29787534adbe657f74c2149fb8b5f749d110b38aee76db9ca3
+MISC ChangeLog 6320 RMD160 98c75d5a0d51011a82d3d3a83c4fe4963127553a SHA1 d4887102e75515594e64c624ba8ea227a692fbae SHA256 5a779a6e69abf328a6b45a56d3d5bdeb005934002780df96357ec23359ecb9bd
 MISC metadata.xml 760 RMD160 b9b95d31917ca092fbc88aaf871ffc6c22746860 SHA1 ee9d60b1947e1fb1542488003713ec1bcf3f3b71 SHA256 9d60cbec2e12219f15e311a1e8cb694b77fd7897c98186be3012f815c0f7bd12
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.16 (GNU/Linux)
+
+iEYEARECAAYFAky4pUIACgkQgAnW8HDreRaqHQCfVCeorCNElnQkFih2LLFPGUer
+inoAniejUB0BkM8Iz2Srv7+B1eV1ekPT
+=eXaE
+-----END PGP SIGNATURE-----
diff --git a/sci-biology/t-coffee/t-coffee-5.65.ebuild b/sci-biology/t-coffee/t-coffee-5.65.ebuild
deleted file mode 100644
index bcd73aaf6829..000000000000
--- a/sci-biology/t-coffee/t-coffee-5.65.ebuild
+++ /dev/null
@@ -1,68 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-5.65.ebuild,v 1.5 2010/10/03 11:22:54 jlec Exp $
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="t-coffee"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 ppc x86"
-
-RESTRICT="mirror"
-
-DEPEND=""
-RDEPEND="sci-biology/clustalw"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	sed -e "s/CC	= cc/CC	= $(tc-getCC) ${CFLAGS}/" -i makefile || die \
-		"Failed to patch makefile."
-}
-
-die_compile() {
-	echo
-	eerror "If you experience an internal compiler error (consult the above"
-	eerror "messages), try compiling t-coffee using very modest compiler flags."
-	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
-	die "Compilation failed"
-}
-
-src_compile() {
-	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
-	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
-	emake all || die_compile
-}
-
-src_install() {
-	dobin "${TCDIR}"/bin/t_coffee \
-		|| die "Failed to install program."
-
-	insinto /usr/share/${PN}/lib/html
-	doins "${TCDIR}"/html/* \
-		|| die "Failed to install Web interface files."
-
-	cd "${TCDIR}"/doc
-	dodoc aln_compare.doc.txt README4T-COFFEE seq_reformat.doc.txt \
-			t_coffee_technical.txt t_coffee_tutorial.txt \
-			|| die "Failed to install text documentation."
-
-	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
-		|| die "Failed to install HTML documentation."
-
-	insinto /usr/share/doc/${PF}
-	doins t_coffee_technical.doc t_coffee_tutorial.doc \
-		|| die "Failed to install DOC documentation."
-
-	insinto /usr/share/${PN}/example
-	doins "${TCDIR}"/example/* \
-		|| die "Failed to install example files."
-}
diff --git a/sci-biology/t-coffee/t-coffee-8.14.ebuild b/sci-biology/t-coffee/t-coffee-8.14.ebuild
deleted file mode 100644
index cec97ab249a8..000000000000
--- a/sci-biology/t-coffee/t-coffee-8.14.ebuild
+++ /dev/null
@@ -1,60 +0,0 @@
-# Copyright 1999-2010 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.14.ebuild,v 1.3 2010/01/03 14:23:29 pacho Exp $
-
-EAPI="2"
-
-inherit toolchain-funcs flag-o-matic
-
-DESCRIPTION="A multiple sequence alignment package"
-LICENSE="GPL-2"
-HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
-SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
-
-SLOT="0"
-IUSE=""
-KEYWORDS="amd64 ~ppc x86"
-
-DEPEND="sci-biology/clustalw"
-RDEPEND="${DEPEND}"
-
-TCDIR="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
-S="${TCDIR}/t_coffee_source"
-
-die_compile() {
-	echo
-	eerror "If you experience an internal compiler error (consult the above"
-	eerror "messages), try compiling t-coffee using very modest compiler flags."
-	eerror "See bug #114745 on the Gentoo Bugzilla for more details."
-	die "Compilation failed"
-}
-
-src_compile() {
-	[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
-	[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
-	CC="$(tc-getCC)" CFLAGS="${CFLAGS}" emake || die_compile
-}
-
-src_install() {
-	dobin t_coffee || die "Failed to install program."
-
-	insinto /usr/share/${PN}/lib/html
-	doins "${TCDIR}"/html/* \
-		|| die "Failed to install Web interface files."
-
-	cd "${TCDIR}"/doc
-	dodoc aln_compare.doc.txt seq_reformat.doc.txt \
-			t_coffee_technical.txt t_coffee_tutorial.txt \
-			|| die "Failed to install text documentation."
-
-	dohtml t_coffee_technical.htm t_coffee_tutorial.htm \
-		|| die "Failed to install HTML documentation."
-
-	insinto /usr/share/doc/${PF}
-	doins t_coffee_technical.doc t_coffee_tutorial.doc \
-		|| die "Failed to install DOC documentation."
-
-	insinto /usr/share/${PN}/example
-	doins "${TCDIR}"/example/* \
-		|| die "Failed to install example files."
-}