sci-biology/rebase: Version Bump

Package-Manager: portage-2.2.12/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 72 insertions, 17 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index b844a1ed605e..608982a14f49 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.126 2014/08/03 18:37:36 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.127 2014/09/15 16:58:59 jlec Exp $
+
+*rebase-1409 (15 Sep 2014)
+
+  15 Sep 2014; Justin Lecher <jlec@gentoo.org> +rebase-1409.ebuild:
+  Version Bump
 
   03 Aug 2014; Agostino Sarubbo <ago@gentoo.org> rebase-1403.ebuild:
   Stable for ppc, wrt bug #512118
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index da991b5ba224..7e6cf26f4acf 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,30 +1,34 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
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 DIST rebase-1403.tar.xz 56541864 SHA256 947f40e42fdd58f0509043c174e87dc83fb74c9348d3c40bea878c99133fd5b1 SHA512 7f9a6b4f0a5d1f79f5aa06ae87514124d4ed5472d0dda4dbe110d5a6e8bbfaabf56d01fac164f40507a62ffd1816b4675461a66a6ff56e92bfa204140430d04c WHIRLPOOL 48cc05dd873e3674dea592a4fe35454028d58bcd3e334fd88ca89b30d2ba741db9086885a358779ab6f592c81e0aa8b77afa21917ec4176898d6351a49372a55
 DIST rebase-1406.tar.xz 92309328 SHA256 70d2c174c64416432b1afa9c26cbe17d5fe6c5514c8f79ab74cfa3bdfe26c03f SHA512 f73c4614847c20d21194fdd71cb387f2e5a4911420b9a8fe854f11c012a97089d34d5f9242a398601f4da2f3af6095d5746d6889014144404bdc71426bbaa1e1 WHIRLPOOL 604497a74d89f590e84e3e7953765b0b94d9310e7c0b09e1cdd8cca659790e5a86c8b353d3e2f4f0c7b6a10e35adcef959d9d1a8ef3d335b9804f28506197083
 DIST rebase-1408.tar.xz 61903408 SHA256 30ae3e5fa9d0af9a92a13a6146a9ae9ee6d31af09ad600e28fc7aedb36c4ce18 SHA512 b753a1bd765124d60b6014bae55f03e322b54722c482bf70688163b585a1a757d15a03e397a33d1145b0aae00c85a0ee7300db93bc10cd454603081b9ae21cca WHIRLPOOL 4beb81d20a13c152bbbd1893bd3810a31311a93dd7be04ea15e160bd83ed56f4ff4ccd78b75a4ccac7b356ac0e6faec1da234162b13bb9ffc684f8f7959cb207
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 EBUILD rebase-1111.ebuild 1557 SHA256 ef443cc60e50737442380b9444cd2d52273b6bbdeeb753039307114ff9ab8c2b SHA512 743092796ae160adc80909d6935154057fcdeacecffd941e89b7034bd2a180cb54f9731d0fba08bdbc3f417b9814f2028e0bab93b976152b8c7525a65a7ad0c8 WHIRLPOOL bd7c5337e92c9741c83768400e0e0817560162a3c4e6d9390ae023b7ac3cebdd019c4e5a22f07c128434c7c954ecc12ad9ccdef2dc576ad15a6388e39fdcaa89
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 EBUILD rebase-1406.ebuild 1205 SHA256 a8548a79e7c2a65c0cc894fddde404a16a7b49875009c4da7005afeaffbf3b0f SHA512 3c35bdfed36aeff9c5d5607b45389f9ce924289628b5fe54b630ce7022ddf35c495b65fc4c7f09660060252938a3d6ec688a5a651498e64b02d66608b92b60b5 WHIRLPOOL 2da6dc94b8a71f3d97922b46be0feff6e14c308dc5883576cc2a39f018abe4d3d84f9c5e5d091d5bb95ccf2be63bb64d7bd83a2631926ee2cedae74a4112c2d9
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+MISC ChangeLog 16575 SHA256 7599728a4ae36f90b3fed7d7e41d870bf3619e6f2ae955f6632d4d21a4b4ad3f SHA512 7ca2ebcb367a0d00a88f88ad44baa979c571b0cd92dd2536bb5b2eb40565c5dc1c08b1a7fa159ada93a1fb80e4db09aa686ea5411daf1f4bcb2572e93d669df2 WHIRLPOOL 6561b43b31e6beb4dade016728bd8eecd1c511e9063fd2538275cd6a7b253e0165c8d76715a73d1be22bb82bbf2c2ec71467effbcd8910a716a700393cf28fba
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diff --git a/sci-biology/rebase/rebase-1409.ebuild b/sci-biology/rebase/rebase-1409.ebuild
new file mode 100644
index 000000000000..b7a5477206a2
--- /dev/null
+++ b/sci-biology/rebase/rebase-1409.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1409.ebuild,v 1.1 2014/09/15 16:58:59 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+	if use emboss; then
+		echo; einfo "Indexing Rebase for usage with EMBOSS."
+		mkdir REBASE || die
+		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+				-protofile proto.${MY_PV} -equivalences \
+				|| die "Indexing Rebase failed."
+		echo
+	fi
+}
+
+src_install() {
+	if ! use minimal; then
+		insinto /usr/share/${PN}
+		doins withrefm.${MY_PV} proto.${MY_PV}
+	fi
+	newdoc REBASE.DOC README
+	if use emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/embossre.{enz,ref,sup}
+		insinto /usr/share/EMBOSS/data
+		doins REBASE/embossre.equ
+	fi
+}