sci-biology/abyss: Moved to autotools-utils.eclass

Package-Manager: portage-2.2.0_alpha188/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 35 insertions, 17 deletions

diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index 6f918fa498eb..89db16567a20 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,9 @@
 # ChangeLog for sci-biology/abyss
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.14 2013/03/11 14:35:27 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.15 2013/07/17 07:32:04 jlec Exp $
+
+  17 Jul 2013; Justin Lecher <jlec@gentoo.org> abyss-1.3.4.ebuild:
+  Moved to autotools-utils.eclass
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
diff --git a/sci-biology/abyss/Manifest b/sci-biology/abyss/Manifest
index 6f0fdeb446d7..b29c49f751bd 100644
--- a/sci-biology/abyss/Manifest
+++ b/sci-biology/abyss/Manifest
@@ -1,5 +1,5 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
 
 AUX abyss-1.3.3-gcc-4.7.patch 388 SHA256 a5f57201cfcffba775003bc2d02aed7263f2fdc03728b75664d5cb3f6af9f977 SHA512 ddc6b832fb821566361570ed129ae23372da48934f402a6b8ce6a2c67c91095db09e4820eacdff4124967948e830ff97120c5ca3c2d913242f761050a6cdd568 WHIRLPOOL a4b4436c1990e3f1f1578d32961870b1b078b887ecb089f77fce45490e0a5ab837f785654ec845e2e5ffe00bf3d92605093e14b6c3f27dfae369ebc1f319f14e
 AUX abyss-1.3.4-gcc-4.7.patch 388 SHA256 369b2f4e34ee63f8fe3d305ee1995b024d1b850404cf9df565f863a56e7933b0 SHA512 4a28fbdc3da8b4a46b6def895b244d566186d90af76592ec72b2a6481ed15563189cefb55238314e604c39596ba7c522947d26c34dbc6ef7cc387d34c0448d4b WHIRLPOOL 0f8bb74f20d835a32524941d2e618774466597dfa5b49138570672474caf4930dc746544d8d3c188226141ebb262619ee9b4ac2a659f543c081ce9c9bb64a012
@@ -7,18 +7,28 @@ DIST abyss-1.2.3.tar.gz 313587 SHA256 d4039cc4cd44ebdcbf3107e6d1e80380dfe3817c64
 DIST abyss-1.2.7.tar.gz 467831 SHA256 2c3bc0b6046dbbfcb9298f91314c4a2979886009a5d5d68178871e3a8b1d11c2
 DIST abyss-1.3.0.tar.gz 509670 SHA256 50ea7d29f442060fa9cb9f794e5b651d99ced38049be3a489c9bbe37288e8012
 DIST abyss-1.3.3.tar.gz 621480 SHA256 60396e2c8813952ceb1c66a3ad7c87eda984aa1e4952a14265217d9f639706a0
-DIST abyss-1.3.4.tar.gz 640545 SHA256 6b6ccb04baaa9d244dd67d95e1512a934d2e54fd28a539149b6845ed5c496baf
+DIST abyss-1.3.4.tar.gz 640545 SHA256 6b6ccb04baaa9d244dd67d95e1512a934d2e54fd28a539149b6845ed5c496baf SHA512 0fa4c14117699945e007412deaeeccca27124a210669accbc1444baf5a4de1a17e1f9b48e6ee43fefed63f0d56b933c847363e59a0fc2bad60ae6d603cd8c09e WHIRLPOOL 42b16f22bc47c8f29b07c256d504d6f58119c64fdcf0e198fd8b836ceb45139fd5cadc7feec72adf958800e55eb1065a449ce7dd288339887dcea4ab13623c01
 EBUILD abyss-1.2.3.ebuild 753 SHA256 693c360bad8e1a93cd2fda81b3471b19af4ba3eeb7bd0b508d2257fb00e7a997 SHA512 3a80d9d87a85b7ecf61cc14d9dcc5e0a4e50cc5ecfec2ba26c198511e0ab6ddd69b84b73c70ff7385e7e27f93cfbb4c16b11fda626a3cc2b4059ce21f35438d7 WHIRLPOOL 94a3fe4c4be63f298e853952d7b6f0973e35321115be9bdee4c4dea4594e0c2b869aa687375a1589fa29370bd2233451aa5eead4f40cff6ff5210ab7f36148e2
 EBUILD abyss-1.2.7.ebuild 869 SHA256 7e0052aca03cf180b839de88f367c0c8f39cb913bea27f4faa781dcb448bbf65 SHA512 c122c9ad4f657b1460efc9febeb558fdebafbc521209dec9310c26e517ef7ef4e2c9d129e24ad1ea85e9f409ffaae6e7ea6483d8fc4944333ef06551dfbde5fc WHIRLPOOL 1d651faa02d843e609e1d0041a1edeff684241b824c15b5b435d40dd9be8b30990e92aaa4fd204bb53ff302c749a8b1ceec6d44aaec1b3efa4852033483b3fe0
 EBUILD abyss-1.3.0.ebuild 917 SHA256 f96bbd4515d854068ae3633324d031250cdf273919596d6117f9c03465823d28 SHA512 9cff8611736320e1315f4bf4cb5006df2602787052aad2fedf7cb66ca53a3e3083c124305bad7a2b0d669c602fe1b997413bf8bc8fd113792b13873e135ba4a9 WHIRLPOOL 1748c986ff41dc71345e87cee7a29c710845c9aa5d73f8ec24e32c91b3dbf6b054e10d90b4d756f8a0876b0dfbc6d7425ec60749a97422f21ad89f9969efbdfb
 EBUILD abyss-1.3.3.ebuild 965 SHA256 4e1f1df4932ef8cc277197bee89405fbf659d9250fa561ae4f55ee511eb6f8cb SHA512 8d9d66dee4a4604064a338521f844d2c338f7226ce79ea62aa9915563315470f470cfa575755b856706adbf3e28a70e73fc422df72025c2087a0f10229a6a309 WHIRLPOOL f23ba72d9ea5a1fc6630a236f22a577955d1f505672f827336478e6ddb497a900aed305f15140d46169774425a11ce520905a868ea66e136d9ac73e5f2b3eda5
-EBUILD abyss-1.3.4.ebuild 965 SHA256 1ae0cb72d55f806d1fde548b48a954b95d7d4b6df1604d80ddaf41dd735b0889 SHA512 581ebfc314db201cf590b81cfdd85f3f87f2364179a34ba023cc12e7684675fdcfc7f770ad697ba0667cd1ee510cf407c672a9273f0877e7c33c6e0afcffa4f9 WHIRLPOOL e13794206eb4432a56fac5d1ce7ef457745facf0b3a1e1786f7ffb200cf3949ac043eb461a76013908d7750a8bad502d54283db21303f517d5528fc89487a442
-MISC ChangeLog 2262 SHA256 3eea5c0c1a1445b1e9ceac9e6b61c70ef88e825eeaccfa10b15b4be46cbecc40 SHA512 a3d57e8b1655ae58b394df8563736e025eac44b1d1c14c1d70ffc4f9961f16dffe0433c69c138511998e6a445a5dbb6e249f96c59841d4301a43db1cc9d826c7 WHIRLPOOL 9d4082d50c0b4702bdabce1a62d5a5fa2cbd4cfdb64524c7396e6d625f68f56df2dd922b4c3b5e8706c0b27e78f2988f5dd4349ba6f03d73a181c1b9d8fcd501
+EBUILD abyss-1.3.4.ebuild 1054 SHA256 9967b59e82e505e7554749df6ca1092d625ff085849cb30e75ce04c95b234f16 SHA512 70997bb901f9d0a2203a618e5952ef0967bd7e5647d3b354f4bc1bd8d11f71596cb0e791c3bc7231a8e630f69df71c31552ca84c60c41df8464937f4c2ef82ab WHIRLPOOL 34fa59427d1ee72eb8584cfc47563ae904fab1dddb9958b11f15df96564dbb27b49e2fb5555041cbe3fefaccfce1a1d766a90fc4e589d2768811dcc19b05d14c
+MISC ChangeLog 2364 SHA256 c3fd0cf9b2269b767ff480cf5ae73f36aa7fca1e827957a9759f623d34e2b909 SHA512 c3e78bee8bdba4d4fd444de8d8050d311d2cffd55643073164a7256351bfba5b11dc0767e95ca2c00f3a623be3218c75360494391c5984ce176603d42e23b5a7 WHIRLPOOL a6aaabff4feea811cb25742ae047cca336456ca02171a19649cc6adb691106788bbbb50db6141d874ae7fcc663276b4ff7783ce00780b8a9759a28e2d733fa22
 MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3
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diff --git a/sci-biology/abyss/abyss-1.3.4.ebuild b/sci-biology/abyss/abyss-1.3.4.ebuild
index 6ce67798ca99..3e8e7fa36f4e 100644
--- a/sci-biology/abyss/abyss-1.3.4.ebuild
+++ b/sci-biology/abyss/abyss-1.3.4.ebuild
@@ -1,10 +1,12 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.1 2012/06/20 20:48:56 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.4.ebuild,v 1.2 2013/07/17 07:32:04 jlec Exp $
 
-EAPI="4"
+EAPI=5
 
-inherit autotools eutils
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils
 
 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
 HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
@@ -23,15 +25,18 @@ RDEPEND="${DEPEND}"
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
 
+PATCHES=( "${FILESDIR}"/${P}-gcc-4.7.patch )
+
 src_prepare() {
-	epatch "${FILESDIR}"/${P}-gcc-4.7.patch
 	sed -i -e "s/-Werror//" configure.ac || die #365195
 	sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
-	eautoreconf
+	autotools-utils_src_prepare
 }
 
 src_configure() {
-	econf \
-		--docdir="${EPREFIX}/usr/share/doc/${PF}" \
+	local myeconfargs=(
+		--docdir="${EPREFIX}/usr/share/doc/${PF}"
 		$(use_enable openmp)
+	)
+	autotools-utils_src_configure
 }