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authorJustin Lecher <jlec@gentoo.org>2015-05-04 13:33:59 +0000
committerJustin Lecher <jlec@gentoo.org>2015-05-04 13:33:59 +0000
commitd3ddc17cbbccdbf4e601e1b134c0bb76de2c3ea7 (patch)
tree580c675ccc0f7325e9fb75383187a9981c2a6d6d /sci-biology
parentStable on arm and ppc. Bug #548530. (diff)
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Version Bump
Package-Manager: portage-2.2.18/cvs/Linux x86_64 Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/rebase/ChangeLog7
-rw-r--r--sci-biology/rebase/Manifest38
-rw-r--r--sci-biology/rebase/rebase-1505.ebuild46
3 files changed, 72 insertions, 19 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index c9987432d3f4..960139a72a26 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/rebase
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.154 2015/04/08 16:53:27 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.155 2015/05/04 13:33:58 jlec Exp $
+
+*rebase-1505 (04 May 2015)
+
+ 04 May 2015; Justin Lecher <jlec@gentoo.org> +rebase-1505.ebuild:
+ Version Bump
*rebase-1503 (08 Apr 2015)
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 9f03a9c00b7f..50a0e568dcd0 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -1,28 +1,30 @@
-----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA256
+Hash: SHA512
DIST rebase-1503.tar.xz 67267924 SHA256 6f808fd86bcc13f92a6ca876fa910260fc50bce50ac4bbe04e8d87cd2f9a4822 SHA512 83f2b1f0b44cb674ca99e1a5a917cd55621d6cd33d2d4d0c635af1bc958c038e6e77f5d1e2d03623010eaecb2ae88d050829797d90cb7142b83f6baace4e4d96 WHIRLPOOL 2e267cd39c626d61d33b37625c9bc56f8f83a84bfa709ac37790b90a400bf2b6e5577c34d7ced6db747dc37fb2aa72071da1e254ba185e81574eac301abd42a6
DIST rebase-1504.tar.xz 69726880 SHA256 70b02c6f4f51b091c31685cc6df5a0442f5fde258cd57d143b6c81a9d2f23190 SHA512 6b35b872bd5e1ee1a7cac72b7caccc03d13ce20e426a05e6c557353c067f6737b82de926dcf0dac5bcffe1c5ff72c76ce3e237d2df7044a7dfb5e930316edc42 WHIRLPOOL 5c72ce616e70d1f47979e1335aa0a5ae22eabad59d5cede5446a2c499a5e6127c4dd99ebb9e9ef09bf3c4b7bf439647e9fadf3e1b782e898039560a96cf6b65a
+DIST rebase-1505.tar.xz 70790908 SHA256 dfeee8c7ee81dcd352e5a18319cc9c34c7cade73ef2843c8e7bec96fac29193f SHA512 9f83e7286908036478f021f1611bc04258458a769ce0cb62d1316726f5d644ed7038869e5e12a896123a33f433063d598c36771c80d90d7998d26a7aa19678d3 WHIRLPOOL 8e8ce8e5882d2a09b32cc5526c97724fec9894566587e79804425dbd68d4eb65644bc86eab3054190529b285c821e94bab0b60723d33bbe91332c5b165f2a9c6
EBUILD rebase-1503.ebuild 1204 SHA256 3051d5dcef35035541f5f195b99cd1e1229ddc3a5409dacb9e611e9e3fb63c30 SHA512 ffa8ef1eedde6c3094d2750ee8ae6d1c6f12bb8c9e1baa5354f84fa2b83ba72ad15e51d8125f1303922dfd08a1ffedb3a97febae6bfdaa87e99826ea3844a282 WHIRLPOOL f8ca53d7634a73927ab44bb48fbaffc69002534e6e1b0d659e0c5af2d8b1f2b1dc4cfcaf45d50fdc76e57378640634a849083f9ee12a1a9a7d532aefb8b463e6
EBUILD rebase-1504.ebuild 1205 SHA256 cb576c293a83a1dff42ec70702a72987a32daa28cb2a1219362121942950b9b8 SHA512 7a5feb4d674ca766c42cfed17552428d5647863cbe69fecc830198521cafdef037ce245c0d12163dff297d451cd0eff0979971a6177e5b9e467c40d6f1ff1406 WHIRLPOOL 3aec57502d2f9c68442265165151a20ae772b8f1bb050d418d0efbfd8816c5ba24d554ee29da3db87b10c6a38c5323474ad114e0e3e7935aec6f32f460280ec4
-MISC ChangeLog 19496 SHA256 d745bb02c5dbea476c76c220cf95a0275b505e0e61e1204656534728db8985af SHA512 f358f066308f3ef42398fc21a06a4d8b4fe2e2ebe739b0d8f7adde05805e01134de67c53cc51e2f2135f2d74cd47f18aeb962685a98f5ae42c040c879667de32 WHIRLPOOL 285ae9a782e152a346904206076325771e98072806b2fcced5f7f97e94ae9e762573c552fa22e146aaec3944767f848b9d4addc04409f018db0bd4bbd51e300e
+EBUILD rebase-1505.ebuild 1205 SHA256 adf5c61af8db25d04ddaaad232aa9010cf534965096272e75cd083462e469ed8 SHA512 67f87b3ef66f2c7410f18fdabf25834be053496f84ea063525853fae28e13c261b00f6736ce58aacb7b9a147c014e642da23c7ace463c7d5e51a56705a6ebd97 WHIRLPOOL 9ca5fdb7c29909cdcd9255e9ed66efa8e7a6133bb58ddacc76a6055842df17b8159d3cbe59e99d1c3f1061ba993f9f9058ddc460af9fa6721f61241a82e90963
+MISC ChangeLog 19606 SHA256 fac21470b9237d89dd67524390164b6a0d5d8b656bc23d5b32a757392bf896d6 SHA512 fd0c44db0a09ec29b7a0f11faedbeb6675f804be671c8d2e5e2806f2d7a1a74f17ca20ed3f107d484540dba629f55ea4303556e48b6940236238e3f8dc8fab66 WHIRLPOOL ecbc79fe8f3e0e6c95b7118348026264df4e1e05112cad334e49f3381775ac02d892b30290ad410a18e994ce9c37f0641d60fd25a0ab1c01308684d5e319f8e6
MISC metadata.xml 813 SHA256 392179fd31cd6876ae2e2501faa8b0733704f03d0414c3668fee1f74a8462e56 SHA512 cfbd842c417a0384b17428cf36d866acbac2f89fa1496f45a908cf0d885879b2318fd21a173dc0a8ddae81c00d1c5a5646296473e199ced9028daeb004bea42a WHIRLPOOL 21c9d1a421d157ae6848a6fd99996566a3b51309e246a4aee531b0abab88698a5323d35a22430d9a21f5803402beac917f5cd295f23651f3889304bbeb65d015
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diff --git a/sci-biology/rebase/rebase-1505.ebuild b/sci-biology/rebase/rebase-1505.ebuild
new file mode 100644
index 000000000000..3d2a2f5ac153
--- /dev/null
+++ b/sci-biology/rebase/rebase-1505.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-1505.ebuild,v 1.1 2015/05/04 13:33:58 jlec Exp $
+
+EAPI=5
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com"
+SRC_URI="http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz"
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris ~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+ if use emboss; then
+ echo; einfo "Indexing Rebase for usage with EMBOSS."
+ mkdir REBASE || die
+ EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+ -protofile proto.${MY_PV} -equivalences \
+ || die "Indexing Rebase failed."
+ echo
+ fi
+}
+
+src_install() {
+ if ! use minimal; then
+ insinto /usr/share/${PN}
+ doins withrefm.${MY_PV} proto.${MY_PV}
+ fi
+ newdoc REBASE.DOC README
+ if use emboss; then
+ insinto /usr/share/EMBOSS/data/REBASE
+ doins REBASE/embossre.{enz,ref,sup}
+ insinto /usr/share/EMBOSS/data
+ doins REBASE/embossre.equ
+ fi
+}