diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/paml/Manifest | 5 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4.2b.ebuild | 39 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4b.ebuild | 40 |
4 files changed, 6 insertions, 84 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index dd135aa374e8..0186bf676153 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/paml # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.7 2009/11/13 15:36:55 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.8 2009/11/13 17:12:58 weaver Exp $ + + 13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> -paml-4.2b.ebuild, + -paml-4b.ebuild: + Drop old versions *paml-4.3a (13 Nov 2009) diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest index 496621c2bfc6..fceeb6f4ffc3 100644 --- a/sci-biology/paml/Manifest +++ b/sci-biology/paml/Manifest @@ -1,11 +1,8 @@ DIST paml4.1.tar.gz 2865301 RMD160 44e5eb18eb9a168c6d2f090ff45462e07234bc07 SHA1 790c83990a93baec48b55686bb350bed43fdc440 SHA256 64680a56304bb3f5cd61cfc9be253fe1fe37250cb450bceaaf76b99ee08111f1 DIST paml4.2b.tar.gz 2664576 RMD160 49465de70e9c973bd269c2808f96ce7cccc4c2ad SHA1 db9e7ce2623049665b7e3a38e14c6f69ad15ac66 SHA256 2ee29961b4e7f07983e01c3587ff5a345ba7dfefaa85352f0c9e71190f8187f8 DIST paml4.3a.tar.gz 2940883 RMD160 0427e2398c1e7983becb20cc6ddce5ba915823b9 SHA1 e1d85c1719c6428b7858944be6b4d9ecb53f5e4a SHA256 5f33f5a4bc6823381161a9abd1082c30e96dc167ebe90d8329e0006068f8d1ab -DIST paml4b.tar.gz 2380479 RMD160 4772ee6c736cc80cc299086c3f18446c22316321 SHA1 adbea6d18d3ea7f87ec37f14a1fe9cabecd1075f SHA256 2b8ebb8f276a822f7589fffe54ee31e170577b811e256536649c793e57d5a94a EBUILD paml-4.1.ebuild 1159 RMD160 e92d3c17407d5362b4438749c3d0d21eaad34337 SHA1 c848a2aee7e7fd0bfbde46b95899a5f84c7e58d6 SHA256 552630b699f130fa154eb719eecccc3a5ec58bfc398344aa3d54ca270fee4aa7 EBUILD paml-4.2b-r1.ebuild 1170 RMD160 9a03b6e6eb277919a2f0a9f9c2c938911085fd33 SHA1 7bbb6e8f26f83b61ebd9bf5ecdebc721c83c53af SHA256 036f85b9125c04211d599b0de85a15ffab0218a4138d22717d883d4bb2b95d14 -EBUILD paml-4.2b.ebuild 1074 RMD160 74c8996cdf57530726918d0ed4ec9f54d202a4d1 SHA1 e351c0f49a31f6770e9c0f084363adbcbbc66f7f SHA256 f622ccd2730086b353584330ec67e34d430ff2c95e9f463910a524cd178dfb45 EBUILD paml-4.3a.ebuild 1167 RMD160 724d39727f80d03d21700b504d329839befc91f9 SHA1 f5fdae3aaba960317fc660fba13483e334c663b3 SHA256 0936fd3b3680215da1e74bf3c1616244b8388d5b18594b967f69e8463211a72f -EBUILD paml-4b.ebuild 1098 RMD160 aae656e556014013603f048c7bfa950cbf668e61 SHA1 a3326fc7c9f0409116dc00395241b749d043dc7a SHA256 7d0a9eec0b66114a6e1a201de8e5909f84dfd74b57fc81e3c76d247582b55d13 -MISC ChangeLog 1177 RMD160 b58731de2eab72989edbdd90a7bc2a282beda580 SHA1 862da7684668db5586fc5c6cabb5ff5158f26344 SHA256 009d5a73f931105f63b9532b1e8403bce20f17ebfc07a9df7ff4a90a3d4e31da +MISC ChangeLog 1286 RMD160 c56d81637d4f45919c5a680f874c83722b14c4b7 SHA1 3d3f820a29c6620352e646338757f0aceeab5bd9 SHA256 523b55bc2d353605426f5f57706de96d40e40d71b75bf186222042ebcc6f8f96 MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f diff --git a/sci-biology/paml/paml-4.2b.ebuild b/sci-biology/paml/paml-4.2b.ebuild deleted file mode 100644 index 324c907c870b..000000000000 --- a/sci-biology/paml/paml-4.2b.ebuild +++ /dev/null @@ -1,39 +0,0 @@ -# Copyright 1999-2009 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.2b.ebuild,v 1.1 2009/04/25 23:08:33 weaver Exp $ - -inherit toolchain-funcs - -MY_P="${PN}42" -DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" -HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" -LICENSE="free-noncomm" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="" -RDEPEND="" -DEPEND="${RDEPEND}" -S="${WORKDIR}/${MY_P}" - -src_compile() { - cd src - emake \ - -f Makefile.UNIX \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS}" \ - || die "make failed" -} - -src_install() { - pushd "${S}"/src - dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 - popd - dodoc README.txt doc/* - insinto /usr/share/${PN}/control - doins *.ctl || die "Failed to install control files" - insinto /usr/share/${PN}/dat - doins stewart* *.dat dat/* || die "Failed to install data files" - insinto /usr/share/${PN} - doins -r examples/ || die "Failed to install examples" -} diff --git a/sci-biology/paml/paml-4b.ebuild b/sci-biology/paml/paml-4b.ebuild deleted file mode 100644 index 58aab90bf711..000000000000 --- a/sci-biology/paml/paml-4b.ebuild +++ /dev/null @@ -1,40 +0,0 @@ -# Copyright 1999-2008 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4b.ebuild,v 1.1 2008/04/20 11:11:20 markusle Exp $ - -inherit toolchain-funcs - -MY_PV="${PV:0:1}" -MY_P="${PN}${MY_PV}" -DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" -HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" -SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" -LICENSE="free-noncomm" -SLOT="0" -KEYWORDS="~x86 ~amd64" -IUSE="" -RDEPEND="" -DEPEND="${RDEPEND}" -S="${WORKDIR}/${MY_P}" - -src_compile() { - cd src - emake \ - -f Makefile.UNIX \ - CC="$(tc-getCC)" \ - CFLAGS="${CFLAGS}" \ - || die "make failed" -} - -src_install() { - pushd "${S}"/src - dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 - popd - dodoc README.txt doc/* - insinto /usr/share/${PN}/control - doins *.ctl || die "Failed to install control files" - insinto /usr/share/${PN}/dat - doins stewart* *.dat dat/* || die "Failed to install data files" - insinto /usr/share/${PN} - doins -r examples/ || die "Failed to install examples" -} |