diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/ncbi-tools/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/Manifest | 14 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild | 11 |
3 files changed, 28 insertions, 6 deletions
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog index ba0d5de0e361..d723c69c6ca2 100644 --- a/sci-biology/ncbi-tools/ChangeLog +++ b/sci-biology/ncbi-tools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/ncbi-tools -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.57 2007/12/31 15:42:24 je_fro Exp $ +# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.58 2008/04/08 21:07:57 dberkholz Exp $ + + 08 Apr 2008; Donnie Berkholz <dberkholz@gentoo.org>; + ncbi-tools-20070826.ebuild: + Respect CFLAGS and compiler on 64-bit systems. Apparently I'm the only + person on amd64 who actually watches it build. =) 31 Dec 2007; Jeff Gardner <je_fro@gentoo.org> ChangeLog: fixing my email address diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest index d95280b0b6f0..591c466d8905 100644 --- a/sci-biology/ncbi-tools/Manifest +++ b/sci-biology/ncbi-tools/Manifest @@ -1,3 +1,6 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + AUX 21ncbi-r1 232 RMD160 ba65fe937c9a29f4cc185d99db18522343bbb28b SHA1 5674f379f7a70e71394bca272fedd72a1622a7da SHA256 55d5d53c177200d4a9369102d3e2d8ef232f09dd8559aab6c6e4d2173e8bb411 AUX ncbi-tools-asn2all.patch 1190 RMD160 3aaccc677bd8b9bad6c6424f5080c71cdac553d7 SHA1 ae22c77cfcd7d416a89ea3fe1e0331264473669d SHA256 e2fd71fdaa07b9e1c9cf646b2d3aa02c2ec822d41dcd45cadfced4164f458bed AUX ncbi-tools-extra_vib.patch 1393 RMD160 05e2dcf17b6af9475625eb0aa0be6bc96071a923 SHA1 bb92aeada6786d4573f9ad98e3d50b4a4201ba10 SHA256 b7639937d59c8bd636c6b02a65a4469d188645b9a10fffd0c8680fb861a7a8e1 @@ -12,6 +15,13 @@ DIST ncbi-tools-sdk-doc.tar.bz2 263568 RMD160 f9c4d610c2535ec2b4afae6ecef065fd57 EBUILD ncbi-tools-20050605.ebuild 5749 RMD160 b44f50468496fd8091515b899d9bc5971db646a3 SHA1 673c0f66d0d2a46b86c5dbcfd2c74d751f531450 SHA256 ff797954513ff7e293ab3519642e0864b781233a7bf15fe5eb98345c8a3c02f5 EBUILD ncbi-tools-20060507.ebuild 6406 RMD160 0d52953dc8cff30b92a68fe9a726f19297f7d72d SHA1 4101fa84b7ab60c58ffb42f0b05bd895f5ab6937 SHA256 2653da742470eb3cc79541cdd745af2f858bbd0356ce141b88cc3e1dd07ad9a6 EBUILD ncbi-tools-20061015-r1.ebuild 6495 RMD160 24ab84b6a4bce25a0571c78a5489d5725e81a01b SHA1 e409498fc64031e0208fb5299d377217670a0759 SHA256 135d19e95452b5662a9751f4101ef17a66a618c3031894bb2aa8f761d64a85ad -EBUILD ncbi-tools-20070826.ebuild 6692 RMD160 1fbe1feaabd9eba5f39d1cb60c49c1c2c024cfde SHA1 a137efca67772099706b721b4ccf05245bf7afc3 SHA256 fac57f3b92bc6ac9450cbb8ca4c6bb6865d29ced450656e8429a82d8609c09c6 -MISC ChangeLog 12732 RMD160 27e3b68138cc7bb0eda43e7633568a6db99f358d SHA1 facd884a3a8afd284e2fe68e583ed9da0427d4a0 SHA256 c8c38f788af227ca1190f7757eafa56b921e285e20889b143bc51cc5ec5a3ac3 +EBUILD ncbi-tools-20070826.ebuild 7041 RMD160 198b145c23b178085317b8b82c96bf520fd8c203 SHA1 85bd889af89ec6526fc5a1f7957c1942198e016f SHA256 951267d208abbd17aafeed358212a79189a87db71c4deb68f28d5014792b6d57 +MISC ChangeLog 12946 RMD160 daaf6d90df32921ca6b1f445a394ef2ab155886a SHA1 c360cb998667ae6150ec9f8b802474dcfe81a2f8 SHA256 dc62b34dec576f6f8e8fe5e43a6e7fd941bac0c37790e921244a7fe0027a0181 MISC metadata.xml 262 RMD160 4eabcbcb990d4d5e3b34db8c27bcd2c0cfcf7501 SHA1 3c024ca60a2b93ed0e0311f6b05ef5ef117bee31 SHA256 89af818a993faf14a4a87e2f254943420156c2a317c385480a9533ba682b650f +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.7 (GNU/Linux) + +iD8DBQFH+96zXVaO67S1rtsRAqjxAKDcMszbPvxNBmOU9KbRcLaIOIaE+ACaAwzZ +Tx/Vz2rsNUA1ApC2OZoI4Ls= +=S4Gz +-----END PGP SIGNATURE----- diff --git a/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild index dc8601189005..cd1a0d084adc 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2007 Gentoo Foundation +# Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild,v 1.3 2007/10/19 22:22:41 je_fro Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20070826.ebuild,v 1.4 2008/04/08 21:07:57 dberkholz Exp $ inherit flag-o-matic toolchain-funcs eutils autotools @@ -92,6 +92,11 @@ src_unpack() { -e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \ -e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \ -i ppclinux.ncbi.mk || die + # ... on generic 64-bit Linux... + sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \ + -e "s/NCBI_LDFLAGS1 = -O3/NCBI_LDFLAGS1 = ${CFLAGS}/" \ + -e "s/NCBI_OPTFLAG = -O3/NCBI_OPTFLAG = ${CFLAGS}/" \ + -i linux64.ncbi.mk || die # ... on generic Linux. sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \ -e "s/NCBI_LDFLAGS1 = -O3/NCBI_LDFLAGS1 = ${CFLAGS}/" \ @@ -110,6 +115,8 @@ src_unpack() { sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" hppalinux.ncbi.mk || die # ... on ppc... sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" ppclinux.ncbi.mk || die + # ... on generic 64-bit Linux... + sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux64.ncbi.mk || die # ... on generic Linux. sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux.ncbi.mk || die |