diff options
Diffstat (limited to 'sci-biology/psipred/psipred-3.1.ebuild')
-rw-r--r-- | sci-biology/psipred/psipred-3.1.ebuild | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/sci-biology/psipred/psipred-3.1.ebuild b/sci-biology/psipred/psipred-3.1.ebuild new file mode 100644 index 000000000000..b81c4149b568 --- /dev/null +++ b/sci-biology/psipred/psipred-3.1.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=3 + +inherit eutils prefix toolchain-funcs versionator + +MY_P="${PN}$(delete_all_version_separators)" + +DESCRIPTION="Protein Secondary Structure Prediction" +HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" +SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz" + +LICENSE="psipred" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-biology/ncbi-tools + || ( sci-biology/update-blastdb sci-biology/ncbi-tools++ )" +DEPEND="" + +S="${WORKDIR}" + +src_prepare() { + rm -f bin/* + epatch \ + "${FILESDIR}"/${PV}-Makefile.patch \ + "${FILESDIR}"/${PV}-path.patch \ + "${FILESDIR}"/${PV}-fgets.patch + eprefixify runpsipred* +} + +src_compile() { + emake -C src CC=$(tc-getCC) || die "emake failed" +} + +src_install() { + emake -C src DESTDIR="${D}" install || die "installation failed" + dobin runpsipred* bin/* BLAST+/runpsipred* || die + insinto /usr/share/${PN} + doins -r data || die "failed to install data" + dodoc README || die "nothing to read" +} + +pkg_postinst() { + elog "Please use the update_blastdb.pl in order to" + elog "maintain your own local blastdb" +} |